Binding regions summary (analysis)

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Analysis title
File:Binding-regions-Binding-regions-summary-icon.png Binding regions summary
Provider
Institute of Systems Biology
Class
BindingRegionsSummary
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Summary of binding regions, density of overlaps (creation of tables: 'summaryOfBindingRegions', 'densityOfBindingRegionOverlaps', 'chart_densityOfBindingRegionOverlaps')

Parameters:

  • Input track – Select input ChIP-seq track (must be the result of the result of 'Merge binding regions for cell-lines' analysis)
  • TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
  • Path to output folder – Output folder will be created under this location
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