Difference between revisions of "Binding regions summary (analysis)"

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(Automatic synchronization with BioUML)
(Automatic synchronization with BioUML)
 
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==== Parameters: ====
 
==== Parameters: ====
  
* '''Input track''' – Select input ChIP-seq track (must be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
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* '''Input track''' – Select input track (it has to contain the merged binding regions; it can be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
* '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column)
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* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
* '''Path to output folder''' – Output folder will be created under this location
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[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 12:19, 25 August 2015

Analysis title
Default-analysis-icon.png Binding regions summary
Provider
Institute of Systems Biology
Class
BindingRegionsSummary
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

Summary of binding regions, density of overlaps (creation of tables: 'summaryOfBindingRegions', 'densityOfBindingRegionOverlaps', 'chart_densityOfBindingRegionOverlaps')

[edit] Parameters:

  • Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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