Difference between revisions of "Analysis of Cis-Regulatory Modules (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-Analysis-of-Cis-Regulatory-Modules-icon.png]] Analysis of Cis-Regulatory Modules
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:[[File:Default-analysis-icon.png]] Analysis of Cis-Regulatory Modules
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Class
 
;Class
:{{Class|ru.biosoft.bsa.analysis.cisregmodule.CisRegModule}}
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:{{Class|biouml.plugins.bindingregions.cisregmodule.CisRegModule}}
 
;Plugin
 
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Binding regions (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Analysis of Cis-Regulatory Modules
Provider
Institute of Systems Biology
Class
CisRegModule
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Parameters:

  • MODE – MODE defines the concrete session of given analysis. The detailed description of MODE see in panel 'Application Log'
  • Exp parameters – Exp parameters
    • Sequence path – Sequence path
  • ChIP-Seq Regions path – ChIP-Seq Regions path
  • Sequences path – It is nessecary for determination of Genome Build
  • Minimal number of overlaps – Minimally admissible number of overlapped ChIP-Seq regions
  • Specie – Specie
  • Table path – Path where to save resulting table (includes proper table name
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