Difference between revisions of "Track coverage (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)

Revision as of 15:24, 4 April 2013

Calculates the coverage of given track

Parameters:

  • Input track – Track to calculate coverage for
  • Sequences – Collection of sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Sequence collection
    • Genome ID string – Something like 'hg18' or 'mm6'
  • Window size – Size of the window to average the coverage
  • Step – Number of bp to step (at least 1000)
  • Output empty intervals – When checked, intervals without single site will appear in the output table as well
  • Output table – Path to the output table
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox