Difference between revisions of "Search regulated genes (analysis)"

Latest revision as of 18:14, 9 December 2020

Analysis title

Search regulated genes

Provider

Institute of Systems Biology

Class

SearchRegulatedGenes

Plugin

biouml.plugins.gtrd (GTRD)

[edit] Description

Search for genes potentially regulated by the given transcription factor(TF). The gene will be considered as potentially regulated by the given TF if the TF binds near the gene.

[edit] Parameters:

• preparedTables (expert) – preparedTables
• peaksFolder (expert) – peaksFolder
• Organism – Organism
• Transcription factor – Transcription factor
• Data set – Data set
• Cell line – Cell line
• Treatment – Treatment/condition
• Max gene distance – Maximal distance from site to gene
• Regulated genes (expert) – Found genes regulated by transcription factor