Difference between revisions of "Biouml.plugins.bindingregions (plugin)"
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=== Analysis methods === | === Analysis methods === |
Revision as of 15:00, 18 November 2013
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.6
Analysis methods
Analysis methods defined in this plugin:
Analysis of Cis-Regulatory Modules
Binding regions summary
ChIP-Seq characteristics distribution
Cis-module identification
Common and IPS scores correlation
Correlations of best sites
Count olig frequencies
Create matrix by mixture of normal components
Create matrix by mixture of normal components (ChIP-seq)
Distinct TF classes
Gathering genome statistics
IPS ROC-curves
IPS prediction
IPS-scores in SNPs
Identical best site ROC curves
Locations of best sites
Merge binding regions for cell-lines
Mixture of normal components
Non-merged ChIP-Seq tracks summary
ROC curves for best sites union
ROC curves in grouped peaks
SNP regions in genome
SNPs in binding regions