http://wiki.biouml.org/index.php?title=Tests&feed=atom&action=historyTests - Revision history2024-03-29T11:42:39ZRevision history for this page on the wikiMediaWiki 1.20.3http://wiki.biouml.org/index.php?title=Tests&diff=6376&oldid=prevManikitos@yandex.ru: link fixed2015-08-25T04:13:34Z<p>link fixed</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Rule based modelling - BioNetGen tests==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Rule based modelling - BioNetGen tests==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Rule based modelling, using [BioNetGen] approach is under development. Corresponding simulation engine will be available in BioUML version 0.9.5.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Rule based modelling, using <ins class="diffchange diffchange-inline">[</ins>[BioNetGen<ins class="diffchange diffchange-inline">]</ins>] approach is under development. Corresponding simulation engine will be available in BioUML version 0.9.5.</div></td></tr>
</table>Manikitos@yandex.ruhttp://wiki.biouml.org/index.php?title=Tests&diff=4059&oldid=prevAxec@dote.ru at 05:41, 4 June 20132013-06-04T05:41:41Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.1.0 ([http://www.biouml.org/sbml_tests/overview%202.1.0.html details])</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.1.0 ([http://www.biouml.org/sbml_tests/overview%202.1.0.html details])</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.0.2 ([http://www.biouml.org/sbml_tests/overview%202.0.2.html details])</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.0.2 ([http://www.biouml.org/sbml_tests/overview%202.0.2.html details])</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* SBML test suite 3.0.0 including comp and fbc packages([http://www.biouml.org/sbml_tests/overview%203.0.0.html details])</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br>http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br>http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Results for newest SBML test suite 2.3.2 will be available soon. Besides SBML core models they include:</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">* SBML composite hierarchic model tests. </del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">* Flux balance constraint tests.</del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td></tr>
</table>Axec@dote.ruhttp://wiki.biouml.org/index.php?title=Tests&diff=2226&oldid=prevAxec@dote.ru: /* SBML tests */2013-05-06T07:16:07Z<p><span dir="auto"><span class="autocomment">SBML tests</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br>http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br>http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Results for newest SBML test suite 2.3.2 will be available soon. Besides SBML core models they include:</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* SBML composite hierarchic model tests. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* Flux balance constraint tests.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td></tr>
</table>Axec@dote.ruhttp://wiki.biouml.org/index.php?title=Tests&diff=2060&oldid=prevFkolpakov@gmail.com: Created page with " ==SBML tests== The [http://sbml.org/Software/SBML_Test_Suite SBML Test Suite] is a conformance testing system for [http://sbml.org/ SBML]. It allows developers and users to ..."2013-04-30T16:00:30Z<p>Created page with " ==SBML tests== The [http://sbml.org/Software/SBML_Test_Suite SBML Test Suite] is a conformance testing system for [http://sbml.org/ SBML]. It allows developers and users to ..."</p>
<p><b>New page</b></p><div><br />
<br />
==SBML tests==<br />
The [http://sbml.org/Software/SBML_Test_Suite SBML Test Suite] is a conformance testing system for [http://sbml.org/ SBML]. It allows developers and users to test the degree and correctness of SBML support provided in an SBML-compatible software package.<br />
<br />
SBML test suite was used to validate BioUML simulation engines.<br />
<br>Details for BioUML Java simulation engine is available here:<br />
* SBML test suite 2.1.0 ([http://www.biouml.org/sbml_tests/overview%202.1.0.html details])<br />
* SBML test suite 2.0.2 ([http://www.biouml.org/sbml_tests/overview%202.0.2.html details])<br />
<br />
<br />
Here you can start any test via [[BioUML web edition]]:<br />
<br>http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.<br />
<br />
==Discrete Stochastic Models Test Suite (DSMTS)==<br />
The stochastic simulation engine was introduced in BioUML version 0.9.4. It was was tested using [http://code.google.com/p/dsmts/ DSMTS test suite]. <br />
This test suite allows the accuracy of stochastic simulators to be tested against known results.<br />
<br />
Test details are available [http://www.biouml.org/sbml_tests/overview%20dsmts.html here].<br />
<br />
==Rule based modelling - BioNetGen tests==<br />
Rule based modelling, using [BioNetGen] approach is under development. Corresponding simulation engine will be available in BioUML version 0.9.5.</div>Fkolpakov@gmail.com