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  1. (hist) ‎Covid 19 ‎[73,747 bytes]
  2. (hist) ‎Kinetic parameters for COVID-19 models ‎[39,887 bytes]
  3. (hist) ‎BioUML development history ‎[37,800 bytes]
  4. (hist) ‎Workflow ‎[16,452 bytes]
  5. (hist) ‎COVID-19 parameters for Nasopharynx ‎[13,980 bytes]
  6. (hist) ‎Analysis method development ‎[13,270 bytes]
  7. (hist) ‎COVID-19 parameters for Lung ‎[12,844 bytes]
  8. (hist) ‎COVID-19 parameters for Intestine ‎[12,806 bytes]
  9. (hist) ‎Presentations ‎[11,403 bytes]
  10. (hist) ‎GenBank format ‎[11,373 bytes]
  11. (hist) ‎Optimization examples ‎[10,908 bytes]
  12. (hist) ‎Parameter identifiability example ‎[10,576 bytes]
  13. (hist) ‎GTRD ‎[10,090 bytes]
  14. (hist) ‎Descrete events ‎[9,953 bytes]
  15. (hist) ‎Optimization document ‎[9,070 bytes]
  16. (hist) ‎Оptimization document ‎[9,066 bytes]
  17. (hist) ‎BioNetGen language format ‎[9,051 bytes]
  18. (hist) ‎BioUML server installation ‎[8,538 bytes]
  19. (hist) ‎Up and Down Identification (analysis) ‎[8,533 bytes]
  20. (hist) ‎BioUML ‎[8,295 bytes]
  21. (hist) ‎BioUML exceptions ‎[8,120 bytes]
  22. (hist) ‎Flux balance analysis ‎[8,019 bytes]
  23. (hist) ‎Hadoop ‎[7,630 bytes]
  24. (hist) ‎Optimization problem ‎[7,552 bytes]
  25. (hist) ‎GeneNet ‎[7,375 bytes]
  26. (hist) ‎Regulator search (analysis) ‎[7,336 bytes]
  27. (hist) ‎MGL ‎[7,306 bytes]
  28. (hist) ‎Wiggle format ‎[7,073 bytes]
  29. (hist) ‎Ru.biosoft.bsa (plugin) ‎[6,983 bytes]
  30. (hist) ‎Modeling Antihypertensive drugs ‎[6,966 bytes]
  31. (hist) ‎N-Glycan biosynthesis ‎[6,669 bytes]
  32. (hist) ‎BioStore ‎[6,600 bytes]
  33. (hist) ‎Diagram document ‎[6,414 bytes]
  34. (hist) ‎GTRD Workflow ‎[6,396 bytes]
  35. (hist) ‎Gene Transfer Format ‎[6,224 bytes]
  36. (hist) ‎Features ‎[6,084 bytes]
  37. (hist) ‎Host object (extension point) ‎[6,057 bytes]
  38. (hist) ‎Population generation (analysis) ‎[6,041 bytes]
  39. (hist) ‎Biouml.plugins.bindingregions (plugin) ‎[5,919 bytes]
  40. (hist) ‎Tools Comparison 2022 ‎[5,842 bytes]
  41. (hist) ‎Hypergeometric analysis ‎[5,783 bytes]
  42. (hist) ‎Function (extension point) ‎[5,673 bytes]
  43. (hist) ‎Quadratic Hill-climbing (analysis) ‎[5,635 bytes]
  44. (hist) ‎New BioStore ‎[5,632 bytes]
  45. (hist) ‎Antimony ‎[5,597 bytes]
  46. (hist) ‎Guided linear model analysis ‎[5,596 bytes]
  47. (hist) ‎GTRD analysis ‎[5,577 bytes]
  48. (hist) ‎Site prediction ‎[5,530 bytes]
  49. (hist) ‎Ru.biosoft.analysis (plugin) ‎[5,391 bytes]
  50. (hist) ‎CloudMan ‎[5,101 bytes]
  51. (hist) ‎Databases ‎[5,097 bytes]
  52. (hist) ‎Matching BioHub ‎[5,065 bytes]
  53. (hist) ‎KeyNodes hub ‎[5,024 bytes]
  54. (hist) ‎Моделирование сердечно-сосудистой системы ‎[5,012 bytes]
  55. (hist) ‎General Feature Format ‎[4,985 bytes]
  56. (hist) ‎Repository pane ‎[4,978 bytes]
  57. (hist) ‎SIF (file format) ‎[4,973 bytes]
  58. (hist) ‎Enrichment analysis ‎[4,822 bytes]
  59. (hist) ‎RADAU V ‎[4,782 bytes]
  60. (hist) ‎GinSim (file format) ‎[4,718 bytes]
  61. (hist) ‎Search for enriched TFBSs (tracks) (analysis) ‎[4,605 bytes]
  62. (hist) ‎Patient-specific cardiovascular model ‎[4,604 bytes]
  63. (hist) ‎EMBL format ‎[4,584 bytes]
  64. (hist) ‎GTRD statistics ‎[4,542 bytes]
  65. (hist) ‎Plugin development ‎[4,536 bytes]
  66. (hist) ‎Search for enriched TFBSs (genes) (analysis) ‎[4,505 bytes]
  67. (hist) ‎Score based FBC table builder (analysis) ‎[4,400 bytes]
  68. (hist) ‎Quasi-Steady-State Analysis ‎[4,323 bytes]
  69. (hist) ‎EBarrays (analysis) ‎[4,232 bytes]
  70. (hist) ‎Functional classification (analysis) ‎[4,203 bytes]
  71. (hist) ‎Construct composite modules on tracks with keynodes (analysis) ‎[4,196 bytes]
  72. (hist) ‎Information box ‎[4,185 bytes]
  73. (hist) ‎Regression analysis advanced (analysis) ‎[4,180 bytes]
  74. (hist) ‎Metabolic control analysis example ‎[4,089 bytes]
  75. (hist) ‎BioUML user interface ‎[4,057 bytes]
  76. (hist) ‎Construct composite modules with keynodes (analysis) ‎[4,052 bytes]
  77. (hist) ‎SBML (file format) ‎[4,037 bytes]
  78. (hist) ‎BioUML workbench installation ‎[4,029 bytes]
  79. (hist) ‎Diagram type ‎[3,999 bytes]
  80. (hist) ‎Creating Galaxy tool ‎[3,990 bytes]
  81. (hist) ‎BioUML web edition ‎[3,902 bytes]
  82. (hist) ‎SBGN extension ‎[3,878 bytes]
  83. (hist) ‎Convert table (analysis) ‎[3,874 bytes]
  84. (hist) ‎Polynomial Regression analysis ‎[3,837 bytes]
  85. (hist) ‎Fastq mcf ‎[3,798 bytes]
  86. (hist) ‎Defines.js ‎[3,794 bytes]
  87. (hist) ‎Preprocess raw reads (analysis) ‎[3,793 bytes]
  88. (hist) ‎Construct composite modules on tracks (analysis) ‎[3,705 bytes]
  89. (hist) ‎Sensitivity analysis example ‎[3,693 bytes]
  90. (hist) ‎TRRD ‎[3,675 bytes]
  91. (hist) ‎Systems biology - model simulation ‎[3,622 bytes]
  92. (hist) ‎Analysis of Binding Regions (analysis) ‎[3,596 bytes]
  93. (hist) ‎ChIP-seq Analysis ‎[3,594 bytes]
  94. (hist) ‎Construct composite modules (analysis) ‎[3,587 bytes]
  95. (hist) ‎Table document ‎[3,522 bytes]
  96. (hist) ‎Diagram editing history ‎[3,519 bytes]
  97. (hist) ‎Systems biology - manual model construction ‎[3,488 bytes]
  98. (hist) ‎Add expression values (analysis) ‎[3,483 bytes]
  99. (hist) ‎C-tau ‎[3,462 bytes]
  100. (hist) ‎Classification hub ‎[3,444 bytes]
  101. (hist) ‎Transplorer ‎[3,424 bytes]
  102. (hist) ‎BioNetGen ‎[3,387 bytes]
  103. (hist) ‎Evolution strategy (SRES) (analysis) ‎[3,357 bytes]
  104. (hist) ‎Server ICT ‎[3,354 bytes]
  105. (hist) ‎Limma (analysis) ‎[3,321 bytes]
  106. (hist) ‎Steady State (analysis) ‎[3,278 bytes]
  107. (hist) ‎Construct composite modules on tracks (without site search) (analysis) ‎[3,253 bytes]
  108. (hist) ‎Biouml.plugins.gtrd (plugin) ‎[3,205 bytes]
  109. (hist) ‎BED format ‎[3,167 bytes]
  110. (hist) ‎Classification analysis advanced (analysis) ‎[3,143 bytes]
  111. (hist) ‎Particle swarm optimization (analysis) ‎[3,121 bytes]
  112. (hist) ‎Glycan structures ‎[3,097 bytes]
  113. (hist) ‎Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) ‎[3,087 bytes]
  114. (hist) ‎Breakdancer output (file format) ‎[3,075 bytes]
  115. (hist) ‎Biouml.plugins.ensembl (plugin) ‎[3,071 bytes]
  116. (hist) ‎ to user communication ‎[3,062 bytes]
  117. (hist) ‎Flux Balance Constraint (analysis) ‎[3,050 bytes]
  118. (hist) ‎Perspective (extension point) ‎[3,028 bytes]
  119. (hist) ‎MiRNA feed forward loops (analysis) ‎[3,002 bytes]
  120. (hist) ‎Cdk (host object) ‎[2,982 bytes]
  121. (hist) ‎Sample population (analysis) ‎[2,977 bytes]
  122. (hist) ‎Key Node Sensitivity Analysis ‎[2,974 bytes]
  123. (hist) ‎Biouml.plugins.riboseq (plugin) ‎[2,935 bytes]
  124. (hist) ‎CRC Analysis ‎[2,934 bytes]
  125. (hist) ‎Construct composite modules on track (correlation) (analysis) ‎[2,921 bytes]
  126. (hist) ‎Ribo-Seq and mRNA features forming (analysis) ‎[2,921 bytes]
  127. (hist) ‎SiteAnalysis (host object) ‎[2,919 bytes]
  128. (hist) ‎Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) ‎[2,899 bytes]
  129. (hist) ‎Run MACS 1.4.0 on ChiP-Seq (analysis) ‎[2,882 bytes]
  130. (hist) ‎Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) ‎[2,849 bytes]
  131. (hist) ‎Continue CMA (analysis) ‎[2,835 bytes]
  132. (hist) ‎Compute differentially expressed genes using EBarrays (workflow) ‎[2,813 bytes]
  133. (hist) ‎Virtual biology ‎[2,808 bytes]
  134. (hist) ‎Biohub (extension point) ‎[2,791 bytes]
  135. (hist) ‎Treatment Simulation (analysis) ‎[2,786 bytes]
  136. (hist) ‎CellML (file format) ‎[2,778 bytes]
  137. (hist) ‎BioUML team ‎[2,776 bytes]
  138. (hist) ‎Filter table (analysis) ‎[2,763 bytes]
  139. (hist) ‎CWL ‎[2,762 bytes]
  140. (hist) ‎BioUML wiki ‎[2,753 bytes]
  141. (hist) ‎Parameter fitting (analysis) ‎[2,734 bytes]
  142. (hist) ‎Element action (extension point) ‎[2,731 bytes]
  143. (hist) ‎Convert site models to proteins (analysis) ‎[2,730 bytes]
  144. (hist) ‎Compute differentially expressed genes using Limma (workflow) ‎[2,714 bytes]
  145. (hist) ‎Tree-table (element type) ‎[2,698 bytes]
  146. (hist) ‎Types (extension point) ‎[2,599 bytes]
  147. (hist) ‎Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) ‎[2,588 bytes]
  148. (hist) ‎Tabular (file format) ‎[2,588 bytes]
  149. (hist) ‎Model (host object) ‎[2,586 bytes]
  150. (hist) ‎Apply events (analysis) ‎[2,582 bytes]
  151. (hist) ‎Beans (extension point) ‎[2,577 bytes]
  152. (hist) ‎Modular model of the human CVS v.2 ‎[2,557 bytes]
  153. (hist) ‎Track statistics (analysis) ‎[2,541 bytes]
  154. (hist) ‎Generate workflow from annotation diagram (analysis) ‎[2,529 bytes]
  155. (hist) ‎Simulation ‎[2,528 bytes]
  156. (hist) ‎Fasta format ‎[2,520 bytes]
  157. (hist) ‎Matrix derivation (analysis) ‎[2,518 bytes]
  158. (hist) ‎Virtual rat ‎[2,492 bytes]
  159. (hist) ‎Document factory (extension point) ‎[2,440 bytes]
  160. (hist) ‎Biopath ‎[2,429 bytes]
  161. (hist) ‎Correlation Analysis ‎[2,428 bytes]
  162. (hist) ‎Ensembl installation ‎[2,424 bytes]
  163. (hist) ‎Download ‎[2,420 bytes]
  164. (hist) ‎Heatmap (analysis) ‎[2,419 bytes]
  165. (hist) ‎Headless BioUML ‎[2,393 bytes]
  166. (hist) ‎Repository ‎[2,393 bytes]
  167. (hist) ‎Microarray (host object) ‎[2,388 bytes]
  168. (hist) ‎Hypergeometric analysis for multiple inputs (workflow) ‎[2,376 bytes]
  169. (hist) ‎Agilent normalization (analysis) ‎[2,369 bytes]
  170. (hist) ‎Remove overlapping sites (analysis) ‎[2,362 bytes]
  171. (hist) ‎Cluster analysis by K-means (analysis) ‎[2,362 bytes]
  172. (hist) ‎Find genome variants and indels from RNA-seq (workflow) ‎[2,357 bytes]
  173. (hist) ‎Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) ‎[2,322 bytes]
  174. (hist) ‎Find longest connected chains (analysis) ‎[2,312 bytes]
  175. (hist) ‎LRPath (analysis) ‎[2,270 bytes]
  176. (hist) ‎Analyze SNP list (GTRD) (workflow) ‎[2,267 bytes]
  177. (hist) ‎Analyze SNP list (TRANSFAC(R)) (workflow) ‎[2,262 bytes]
  178. (hist) ‎Systems biology - model import 02 ‎[2,253 bytes]
  179. (hist) ‎Genome Browser json ‎[2,251 bytes]
  180. (hist) ‎Graph search ‎[2,247 bytes]
  181. (hist) ‎Compute differentially expressed genes (Affymetrix probes) (workflow) ‎[2,236 bytes]
  182. (hist) ‎Compute differentially expressed genes (Agilent Tox probes) (workflow) ‎[2,230 bytes]
  183. (hist) ‎SDF file ‎[2,226 bytes]
  184. (hist) ‎Danon et al. Covid-19 transmission in England ‎[2,221 bytes]
  185. (hist) ‎Compute differentially expressed genes (Illumina probes) (workflow) ‎[2,214 bytes]
  186. (hist) ‎Compute differentially expressed genes (Agilent probes) (workflow) ‎[2,212 bytes]
  187. (hist) ‎Biomodels ‎[2,184 bytes]
  188. (hist) ‎BioUML development roadmap ‎[2,184 bytes]
  189. (hist) ‎Cellular genetic algorithm (analysis) ‎[2,184 bytes]
  190. (hist) ‎Export (extension point) ‎[2,178 bytes]
  191. (hist) ‎Westerhoff and Kolodkin 2020 COVID19 model ‎[2,176 bytes]
  192. (hist) ‎Reactome ‎[2,176 bytes]
  193. (hist) ‎Mutation effect on sites advanced (analysis) ‎[2,175 bytes]
  194. (hist) ‎Normalize Illumina experiment and control (analysis) ‎[2,171 bytes]
  195. (hist) ‎ChIP-seq Quality control analysis ‎[2,155 bytes]
  196. (hist) ‎Meta analysis ‎[2,146 bytes]
  197. (hist) ‎Analyze any DNA sequence (TRANSFAC(R)) (workflow) ‎[2,130 bytes]
  198. (hist) ‎Bowtie (analysis) ‎[2,127 bytes]
  199. (hist) ‎Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) ‎[2,118 bytes]
  200. (hist) ‎BioBlend ‎[2,115 bytes]
  201. (hist) ‎Mapping to ontology - select a classification (Multiple Gene tables) (workflow) ‎[2,114 bytes]
  202. (hist) ‎Biouml.plugins.keynodes (plugin) ‎[2,112 bytes]
  203. (hist) ‎Analyze promoters (GTRD) (workflow) ‎[2,111 bytes]
  204. (hist) ‎Steady State Examples ‎[2,103 bytes]
  205. (hist) ‎Gene expression prediction ‎[2,103 bytes]
  206. (hist) ‎PCA (analysis) ‎[2,096 bytes]
  207. (hist) ‎Report generator for quality control analysis ‎[2,096 bytes]
  208. (hist) ‎GeneXplain ‎[2,096 bytes]
  209. (hist) ‎Create random track (analysis) ‎[2,093 bytes]
  210. (hist) ‎Manual parameter fitting ‎[2,092 bytes]
  211. (hist) ‎Biouml.plugins.genomeenhancer (plugin) ‎[2,086 bytes]
  212. (hist) ‎Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) ‎[2,085 bytes]
  213. (hist) ‎Join two tables (analysis) ‎[2,081 bytes]
  214. (hist) ‎JVODE ‎[2,080 bytes]
  215. (hist) ‎Analyze promoters (TRANSFAC(R)) (workflow) ‎[2,074 bytes]
  216. (hist) ‎Parameter identifiability (table) (analysis) ‎[2,069 bytes]
  217. (hist) ‎BioGears ‎[2,062 bytes]
  218. (hist) ‎Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) ‎[2,062 bytes]
  219. (hist) ‎Annotate table (analysis) ‎[2,054 bytes]
  220. (hist) ‎Mapping to GO ontologies and comparison for two gene sets (workflow) ‎[2,042 bytes]
  221. (hist) ‎Transformer (extension point) ‎[2,041 bytes]
  222. (hist) ‎Identify enriched composite modules in promoters (GTRD) (workflow) ‎[2,040 bytes]
  223. (hist) ‎Create transcript region track (analysis) ‎[2,039 bytes]
  224. (hist) ‎Run MACS 1.3.7 on ChiP-Seq (analysis) ‎[2,027 bytes]
  225. (hist) ‎Affymetrix normalization (analysis) ‎[2,023 bytes]
  226. (hist) ‎Find regulatory regions (analysis) ‎[2,022 bytes]
  227. (hist) ‎Find regulatory regions with mutations (analysis) ‎[2,006 bytes]
  228. (hist) ‎Sites Motifs Analysis ‎[2,006 bytes]
  229. (hist) ‎GTRD comparison ‎[2,003 bytes]
  230. (hist) ‎PharmML ‎[2,000 bytes]
  231. (hist) ‎Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) ‎[1,993 bytes]
  232. (hist) ‎Mapping to ontologies (TRANSPATH(R)) (workflow) ‎[1,992 bytes]
  233. (hist) ‎Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) ‎[1,990 bytes]
  234. (hist) ‎Moved class (extension point) ‎[1,971 bytes]
  235. (hist) ‎Hash parameters ‎[1,970 bytes]
  236. (hist) ‎Pharmaceutical Compounds analysis ‎[1,969 bytes]
  237. (hist) ‎Join table (analysis) ‎[1,969 bytes]
  238. (hist) ‎Find gene fusions from RNA-seq (workflow) ‎[1,965 bytes]
  239. (hist) ‎Modular model of the human CVS v.1 ‎[1,953 bytes]
  240. (hist) ‎Method (extension point) ‎[1,951 bytes]
  241. (hist) ‎Normalize Affymetrix experiment and control (analysis) ‎[1,948 bytes]
  242. (hist) ‎Collaborative diagram editing ‎[1,947 bytes]
  243. (hist) ‎Table (element type) ‎[1,946 bytes]
  244. (hist) ‎Ru.biosoft.access (plugin) ‎[1,929 bytes]
  245. (hist) ‎Genome browser ‎[1,915 bytes]
  246. (hist) ‎Quasi-steady-state analysis example ‎[1,904 bytes]
  247. (hist) ‎GLBSOLVE (analysis) ‎[1,887 bytes]
  248. (hist) ‎Composite module to proteins (analysis) ‎[1,886 bytes]
  249. (hist) ‎MEALR (tracks) (analysis) ‎[1,874 bytes]
  250. (hist) ‎Mutation effect on sites (analysis) ‎[1,874 bytes]
  251. (hist) ‎Bsa (host object) ‎[1,874 bytes]
  252. (hist) ‎RNA-Seq analysis ‎[1,860 bytes]
  253. (hist) ‎Mixture of normal components (analysis) ‎[1,853 bytes]
  254. (hist) ‎Track (element type) ‎[1,848 bytes]
  255. (hist) ‎Genome Browser iframe ‎[1,844 bytes]
  256. (hist) ‎Quality control analysis ‎[1,826 bytes]
  257. (hist) ‎Normalize Agilent experiment and control (analysis) ‎[1,823 bytes]
  258. (hist) ‎Select keynodes with top targets (analysis) ‎[1,819 bytes]
  259. (hist) ‎Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) ‎[1,814 bytes]
  260. (hist) ‎Mapping to ontology - select a classification (2 Gene tables) (workflow) ‎[1,810 bytes]
  261. (hist) ‎Import (extension point) ‎[1,805 bytes]
  262. (hist) ‎Mapping to ontology - select a classification (Gene table) (workflow) ‎[1,803 bytes]
  263. (hist) ‎BuildProfileModel (analysis) ‎[1,800 bytes]
  264. (hist) ‎Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) ‎[1,799 bytes]
  265. (hist) ‎Transform (host object) ‎[1,798 bytes]
  266. (hist) ‎Method description HTML file ‎[1,797 bytes]
  267. (hist) ‎HumanSim ‎[1,789 bytes]
  268. (hist) ‎Reference type (extension point) ‎[1,787 bytes]
  269. (hist) ‎Calculate keynodes ranks (analysis) ‎[1,784 bytes]
  270. (hist) ‎Calculate CMA regulation (analysis) ‎[1,780 bytes]
  271. (hist) ‎Modular modeling ‎[1,780 bytes]
  272. (hist) ‎Overall circulation model ‎[1,778 bytes]
  273. (hist) ‎GTEX Mutation effect on sites (analysis) ‎[1,773 bytes]
  274. (hist) ‎Cistrom construction (analysis) ‎[1,773 bytes]
  275. (hist) ‎Mass Conservation Analysis ‎[1,773 bytes]
  276. (hist) ‎SPAdes ‎[1,764 bytes]
  277. (hist) ‎SNP matching (analysis) ‎[1,759 bytes]
  278. (hist) ‎Calculate weighted mutation score (analysis) ‎[1,757 bytes]
  279. (hist) ‎Fantom analysis ‎[1,754 bytes]
  280. (hist) ‎Sensitivity Analysis ‎[1,754 bytes]
  281. (hist) ‎Convert site search summary (analysis) ‎[1,753 bytes]
  282. (hist) ‎Product ‎[1,750 bytes]
  283. (hist) ‎Analyze any DNA sequence (GTRD) (workflow) ‎[1,748 bytes]
  284. (hist) ‎Data (host object) ‎[1,747 bytes]
  285. (hist) ‎PredictStartSites (analysis) ‎[1,744 bytes]
  286. (hist) ‎ChIPHorde (analysis) ‎[1,739 bytes]
  287. (hist) ‎MSAT (analysis) ‎[1,738 bytes]
  288. (hist) ‎Stoichiometric Matrix (analysis) ‎[1,737 bytes]
  289. (hist) ‎Find master regulators for multiple gene sets (GeneWays) (workflow) ‎[1,735 bytes]
  290. (hist) ‎Effector search (analysis) ‎[1,729 bytes]
  291. (hist) ‎Gene set enrichment analysis (Illumina probes) (workflow) ‎[1,728 bytes]
  292. (hist) ‎Gene set enrichment analysis (Affymetrix probes) (workflow) ‎[1,723 bytes]
  293. (hist) ‎DiChIPHorde (analysis) ‎[1,721 bytes]
  294. (hist) ‎Galaxy installation ‎[1,705 bytes]
  295. (hist) ‎Metabolic Control Analysis ‎[1,702 bytes]
  296. (hist) ‎Analyze miRNA target enrichment (analysis) ‎[1,686 bytes]
  297. (hist) ‎Prediction of TF-binding sites of given TF (analysis) ‎[1,686 bytes]
  298. (hist) ‎Visual modeling ‎[1,683 bytes]
  299. (hist) ‎Ensembl ‎[1,682 bytes]
  300. (hist) ‎VCF format ‎[1,678 bytes]
  301. (hist) ‎Find common effectors for multiple gene sets (GeneWays) (workflow) ‎[1,663 bytes]
  302. (hist) ‎Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) ‎[1,651 bytes]
  303. (hist) ‎Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) ‎[1,637 bytes]
  304. (hist) ‎Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) ‎[1,637 bytes]
  305. (hist) ‎ROC-curves in clusterized peaks (analysis) ‎[1,636 bytes]
  306. (hist) ‎Tools Comparison ‎[1,630 bytes]
  307. (hist) ‎Sites genome location (analysis) ‎[1,628 bytes]
  308. (hist) ‎Biouml.workbench (plugin) ‎[1,626 bytes]
  309. (hist) ‎Find shortest path between two sets (analysis) ‎[1,620 bytes]
  310. (hist) ‎Analyze any DNA sequence for site enrichment (GTRD) (workflow) ‎[1,619 bytes]
  311. (hist) ‎Find genome variants and indels from full-genome NGS (workflow) ‎[1,613 bytes]
  312. (hist) ‎ROC curves for best sites union (analysis) ‎[1,612 bytes]
  313. (hist) ‎Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) ‎[1,610 bytes]
  314. (hist) ‎Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) ‎[1,602 bytes]
  315. (hist) ‎ChIP-Seq - Identify and classify target genes (workflow) ‎[1,597 bytes]
  316. (hist) ‎ROC-curves in overlapped ChIP-Seq peaks (analysis) ‎[1,596 bytes]
  317. (hist) ‎Regression analysis ‎[1,595 bytes]
  318. (hist) ‎Identify enriched motifs in promoters (GTRD) (workflow) ‎[1,592 bytes]
  319. (hist) ‎Create matrix by mixture of normal components (analysis) ‎[1,579 bytes]
  320. (hist) ‎Diagram view part (extension point) ‎[1,578 bytes]
  321. (hist) ‎Site search on gene set (analysis) ‎[1,576 bytes]
  322. (hist) ‎Gene set enrichment analysis (Agilent probes) (workflow) ‎[1,575 bytes]
  323. (hist) ‎TF binding sites prediction in genome or track (analysis) ‎[1,572 bytes]
  324. (hist) ‎Merge binding regions for cell-lines (analysis) ‎[1,572 bytes]
  325. (hist) ‎Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow) ‎[1,571 bytes]
  326. (hist) ‎Venn diagrams (analysis) ‎[1,571 bytes]
  327. (hist) ‎Intersect tracks (analysis) ‎[1,569 bytes]
  328. (hist) ‎QUAST ‎[1,569 bytes]
  329. (hist) ‎Tutorials ‎[1,567 bytes]
  330. (hist) ‎Module type (extension point) ‎[1,562 bytes]
  331. (hist) ‎Geneways ‎[1,551 bytes]
  332. (hist) ‎Identical best site ROC-curves (analysis) ‎[1,549 bytes]
  333. (hist) ‎ChIPMunk (analysis) ‎[1,549 bytes]
  334. (hist) ‎Transcriptome mappability (analysis) ‎[1,544 bytes]
  335. (hist) ‎Script type (extension point) ‎[1,534 bytes]
  336. (hist) ‎Biouml.plugins.cma (plugin) ‎[1,533 bytes]
  337. (hist) ‎ROC-curves in grouped peaks (analysis) ‎[1,532 bytes]
  338. (hist) ‎DiChIPMunk (analysis) ‎[1,530 bytes]
  339. (hist) ‎CloudBioLinux ‎[1,528 bytes]
  340. (hist) ‎Mutations to genes with weights (analysis) ‎[1,525 bytes]
  341. (hist) ‎ComputeTranscriptProfile (analysis) ‎[1,523 bytes]
  342. (hist) ‎Find 10 master regulators in networks (TRANSPATH(R)) (workflow) ‎[1,520 bytes]
  343. (hist) ‎Search tools ‎[1,514 bytes]
  344. (hist) ‎Functional classification by diagrams (analysis) ‎[1,512 bytes]
  345. (hist) ‎Cis-module sets near given genes (analysis) ‎[1,503 bytes]
  346. (hist) ‎Look and feel (extension point) ‎[1,500 bytes]
  347. (hist) ‎Perspective ‎[1,487 bytes]
  348. (hist) ‎Annotation (extension point) ‎[1,487 bytes]
  349. (hist) ‎Correlations of best sites (analysis) ‎[1,476 bytes]
  350. (hist) ‎Biouml.plugins.affymetrix (plugin) ‎[1,474 bytes]
  351. (hist) ‎Compare TFBS mutations (analysis) ‎[1,471 bytes]
  352. (hist) ‎GTRD analysis advanced (analysis) ‎[1,468 bytes]
  353. (hist) ‎IPS ROC-curves (analysis) ‎[1,467 bytes]
  354. (hist) ‎Process track with sites (analysis) ‎[1,465 bytes]
  355. (hist) ‎Find common effectors in networks (TRANSPATH(R)) (workflow) ‎[1,458 bytes]
  356. (hist) ‎Layout (extension point) ‎[1,451 bytes]
  357. (hist) ‎Locations of best sites (analysis) ‎[1,442 bytes]
  358. (hist) ‎Prediction of miRNA binding sites (workflow) ‎[1,435 bytes]
  359. (hist) ‎Cross cost grid layout ‎[1,432 bytes]
  360. (hist) ‎Visible plugin (extension point) ‎[1,431 bytes]
  361. (hist) ‎Convert table to VCF track (analysis) ‎[1,429 bytes]
  362. (hist) ‎Estimate read density (analysis) ‎[1,425 bytes]
  363. (hist) ‎Classification analysis ‎[1,425 bytes]
  364. (hist) ‎Tests ‎[1,424 bytes]
  365. (hist) ‎Profiles Statistics (analysis) ‎[1,417 bytes]
  366. (hist) ‎Biouml.plugins.transpath (plugin) ‎[1,417 bytes]
  367. (hist) ‎Gene Ontology ‎[1,405 bytes]
  368. (hist) ‎Gene set enrichment analysis - select a classification (Gene table) (workflow) ‎[1,405 bytes]
  369. (hist) ‎Transform track to table (analysis) ‎[1,397 bytes]
  370. (hist) ‎Find master regulators in networks (GeneWays) (workflow) ‎[1,390 bytes]
  371. (hist) ‎Systems biology - model import ‎[1,388 bytes]
  372. (hist) ‎Fold-Change calculation (analysis) ‎[1,388 bytes]
  373. (hist) ‎MicroRNA aligner (analysis) ‎[1,387 bytes]
  374. (hist) ‎Sites genome location for folders (analysis) ‎[1,385 bytes]
  375. (hist) ‎BioUML - systems biology ‎[1,381 bytes]
  376. (hist) ‎Mapping to ontologies for multiple gene sets (workflow) ‎[1,366 bytes]
  377. (hist) ‎Identification of composite elements by filters (analysis) ‎[1,365 bytes]
  378. (hist) ‎Jupyter ‎[1,359 bytes]
  379. (hist) ‎ComputeProfileSums (analysis) ‎[1,350 bytes]
  380. (hist) ‎Diagram graph compare analysis ‎[1,347 bytes]
  381. (hist) ‎Parameter identifiability (optimization) (analysis) ‎[1,345 bytes]
  382. (hist) ‎Common and IPS scores correlation (analysis) ‎[1,344 bytes]
  383. (hist) ‎Find master regulators in networks (TRANSPATH(R)) (workflow) ‎[1,343 bytes]
  384. (hist) ‎Adaptive simulated annealing (analysis) ‎[1,341 bytes]
  385. (hist) ‎Cluster by shortest path (analysis) ‎[1,340 bytes]
  386. (hist) ‎Isoform TE (analysis) ‎[1,334 bytes]
  387. (hist) ‎Filter one track by another (analysis) ‎[1,331 bytes]
  388. (hist) ‎Gene set enrichment analysis HumanPSD (Gene table) (workflow) ‎[1,330 bytes]
  389. (hist) ‎Building Flux Balance DataTable (analysis) ‎[1,328 bytes]
  390. (hist) ‎About dialog (extension point) ‎[1,326 bytes]
  391. (hist) ‎Template (extension point) ‎[1,323 bytes]
  392. (hist) ‎Non-merged ChIP-Seq tracks summary (analysis) ‎[1,320 bytes]
  393. (hist) ‎Matrix comparison (analysis) ‎[1,319 bytes]
  394. (hist) ‎Optimization (host object) ‎[1,319 bytes]
  395. (hist) ‎Compare analysis results (analysis) ‎[1,318 bytes]
  396. (hist) ‎Gene set enrichment analysis (Gene table) (workflow) ‎[1,311 bytes]
  397. (hist) ‎PSD pharmaceutical compounds analysis ‎[1,308 bytes]
  398. (hist) ‎Filtration of predicted sites by filters (analysis) ‎[1,307 bytes]
  399. (hist) ‎Convert table to track (analysis) ‎[1,307 bytes]
  400. (hist) ‎Create tissue-specific promoter track (analysis) ‎[1,296 bytes]
  401. (hist) ‎CRISPR Cas9 and specific oligonucleotides (analysis) ‎[1,296 bytes]
  402. (hist) ‎Gathering genome statistics (analysis) ‎[1,294 bytes]
  403. (hist) ‎Analyze any DNA sequence, GeneBank (workflow) ‎[1,291 bytes]
  404. (hist) ‎Count reads in transcripts (analysis) ‎[1,290 bytes]
  405. (hist) ‎Site search result optimization (analysis) ‎[1,290 bytes]
  406. (hist) ‎Add calculated column (analysis) ‎[1,283 bytes]
  407. (hist) ‎Analyze any DNA sequence, EMBL (workflow) ‎[1,283 bytes]
  408. (hist) ‎Distinct TF classes (analysis) ‎[1,279 bytes]
  409. (hist) ‎Reference type ‎[1,279 bytes]
  410. (hist) ‎Analyze any DNA sequence, Fasta (workflow) ‎[1,276 bytes]
  411. (hist) ‎Add reactants (analysis) ‎[1,276 bytes]
  412. (hist) ‎Wizard page (extension point) ‎[1,275 bytes]
  413. (hist) ‎Add genes from CMA (analysis) ‎[1,272 bytes]
  414. (hist) ‎Biouml.plugins.modelreduction (plugin) ‎[1,270 bytes]
  415. (hist) ‎Linear Shifted Model (analysis) ‎[1,268 bytes]
  416. (hist) ‎Lucene indexes creation ‎[1,264 bytes]
  417. (hist) ‎Data matrix operations (analysis) ‎[1,260 bytes]
  418. (hist) ‎Site model (element type) ‎[1,256 bytes]
  419. (hist) ‎Explain my genes (workflow) ‎[1,252 bytes]
  420. (hist) ‎IPS prediction (analysis) ‎[1,250 bytes]
  421. (hist) ‎Find common effectors in networks (GeneWays) (workflow) ‎[1,248 bytes]
  422. (hist) ‎SimulationEngine (host object) ‎[1,246 bytes]
  423. (hist) ‎AUC Estimation For meta-cluster track (analysis) ‎[1,244 bytes]
  424. (hist) ‎BioUML workbench ‎[1,244 bytes]
  425. (hist) ‎Algebraic steady state (analysis) ‎[1,241 bytes]
  426. (hist) ‎Systems biology - model export ‎[1,235 bytes]
  427. (hist) ‎Interval format ‎[1,231 bytes]
  428. (hist) ‎MicroRNA finder (analysis) ‎[1,225 bytes]
  429. (hist) ‎Normalization quality plots (analysis) ‎[1,222 bytes]
  430. (hist) ‎Update master track (analysis) ‎[1,215 bytes]
  431. (hist) ‎Illumina normalization (analysis) ‎[1,215 bytes]
  432. (hist) ‎Compute coverage by window (analysis) ‎[1,214 bytes]
  433. (hist) ‎BioUML server ‎[1,214 bytes]
  434. (hist) ‎Colon cancer signature (analysis) ‎[1,208 bytes]
  435. (hist) ‎Filter track by condition (analysis) ‎[1,204 bytes]
  436. (hist) ‎Quality control metrics (analysis) ‎[1,202 bytes]
  437. (hist) ‎BuildASiteOffsetTable (analysis) ‎[1,200 bytes]
  438. (hist) ‎Identification of cis-regulatory modules with given pattern of TF-classes (analysis) ‎[1,200 bytes]
  439. (hist) ‎Create matrix logo (analysis) ‎[1,199 bytes]
  440. (hist) ‎Cluster by path (analysis) ‎[1,193 bytes]
  441. (hist) ‎Intersect tables (analysis) ‎[1,192 bytes]
  442. (hist) ‎SNP regions in genome (analysis) ‎[1,191 bytes]
  443. (hist) ‎Analysis (element type) ‎[1,190 bytes]
  444. (hist) ‎Multivariate regression analysis ‎[1,189 bytes]
  445. (hist) ‎PASS analysis ‎[1,184 bytes]
  446. (hist) ‎SRA to FASTQ (workflow) ‎[1,181 bytes]
  447. (hist) ‎Select top rows (analysis) ‎[1,178 bytes]
  448. (hist) ‎Create database from diagram (analysis) ‎[1,177 bytes]
  449. (hist) ‎Nonlinear Model (analysis) ‎[1,175 bytes]
  450. (hist) ‎Convert genomic BAM to transcriptomic (analysis) ‎[1,174 bytes]
  451. (hist) ‎Sites Open Chromatin Statistics (analysis) ‎[1,173 bytes]
  452. (hist) ‎IPS-scores in SNPs (analysis) ‎[1,173 bytes]
  453. (hist) ‎Cell type specific TFBS prediction ‎[1,164 bytes]
  454. (hist) ‎General control panel ‎[1,164 bytes]
  455. (hist) ‎Univariate samples analysis ‎[1,160 bytes]
  456. (hist) ‎Track coverage (analysis) ‎[1,157 bytes]
  457. (hist) ‎Outer join (analysis) ‎[1,156 bytes]
  458. (hist) ‎Context item (extension point) ‎[1,151 bytes]
  459. (hist) ‎Combined track ‎[1,147 bytes]
  460. (hist) ‎Make GTF for riboseq alignment (analysis) ‎[1,146 bytes]
  461. (hist) ‎Create DAS track (analysis) ‎[1,141 bytes]
  462. (hist) ‎Univariate sample analysis ‎[1,138 bytes]
  463. (hist) ‎Create profile from matrix library (analysis) ‎[1,134 bytes]
  464. (hist) ‎Cluster analysis ‎[1,134 bytes]
  465. (hist) ‎GlycanR (analysis) ‎[1,133 bytes]
  466. (hist) ‎Recalculate composite module score on new track (analysis) ‎[1,131 bytes]
  467. (hist) ‎Convert files to tracks (analysis) ‎[1,131 bytes]
  468. (hist) ‎Reduce CMA results (analysis) ‎[1,122 bytes]
  469. (hist) ‎Diagram (element type) ‎[1,120 bytes]
  470. (hist) ‎Transcriptome minimal unique length (analysis) ‎[1,116 bytes]
  471. (hist) ‎Система кровообращения человека ‎[1,115 bytes]
  472. (hist) ‎Sequence (element type) ‎[1,115 bytes]
  473. (hist) ‎Expression mapping ‎[1,114 bytes]
  474. (hist) ‎BioHub ‎[1,112 bytes]
  475. (hist) ‎Cluster track (analysis) ‎[1,099 bytes]
  476. (hist) ‎Mapping to ontologies (Gene table) (workflow) ‎[1,097 bytes]
  477. (hist) ‎File (element type) ‎[1,094 bytes]
  478. (hist) ‎SNPs in binding regions (analysis) ‎[1,091 bytes]
  479. (hist) ‎Repository actions provider (extension point) ‎[1,086 bytes]
  480. (hist) ‎TreeMap on Functional classification (analysis) ‎[1,083 bytes]
  481. (hist) ‎Binding regions summary (analysis) ‎[1,082 bytes]
  482. (hist) ‎Search binding sites (analysis) ‎[1,081 bytes]
  483. (hist) ‎IPS motif discovery (analysis) ‎[1,078 bytes]
  484. (hist) ‎LincRNA and mRNA features (analysis) ‎[1,073 bytes]
  485. (hist) ‎Analysis of Cis-Regulatory Modules (analysis) ‎[1,067 bytes]
  486. (hist) ‎GWAS format ‎[1,066 bytes]
  487. (hist) ‎Folder (element type) ‎[1,065 bytes]
  488. (hist) ‎Save hits (analysis) ‎[1,063 bytes]
  489. (hist) ‎Sequence mappability (analysis) ‎[1,057 bytes]
  490. (hist) ‎Convert identifiers for multiple gene sets (workflow) ‎[1,054 bytes]
  491. (hist) ‎ChIP-Seq peaks clusterization (analysis) ‎[1,054 bytes]
  492. (hist) ‎Common class (extension point) ‎[1,054 bytes]
  493. (hist) ‎Chromosome enrichment (analysis) ‎[1,052 bytes]
  494. (hist) ‎Sites Open Chromatin Statistics For Folders (analysis) ‎[1,049 bytes]
  495. (hist) ‎Visualize results (analysis) ‎[1,049 bytes]
  496. (hist) ‎GeneXplain GmbH ‎[1,048 bytes]
  497. (hist) ‎Quantile normalization (analysis) ‎[1,046 bytes]
  498. (hist) ‎Peak finders comparison (analysis) ‎[1,034 bytes]
  499. (hist) ‎Enrichment (host object) ‎[1,033 bytes]
  500. (hist) ‎Track to gene set (analysis) ‎[1,032 bytes]

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