SAM or BAM alignment file

File format title

SAM or BAM alignment file (*.sam, *.bam)

Element type

track

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

SAM or BAM alignment file (*.sam, *.bam)

Import SAM/BAM file

Parameters:

• File to import – Specify file from your computer
• Target – Path in repository to put imported file to
• Properties – Additional importer parameters
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Genome ID string – Something like 'hg18' or 'mm6'
  • Create index – Create index (can take a long time)