Difference between revisions of "Ru.biosoft.bsa (plugin)"
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;Version | ;Version | ||
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| + | === Analysis methods === | ||
| + | Analysis methods defined in this plugin: | ||
| + | *[[Analysis of Binding Regions (analysis)|Analysis of Binding Regions]] | ||
| + | *[[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | ||
| + | *[[Analysis of SNPs and Binding sites (analysis)|Analysis of SNPs and Binding sites]] | ||
| + | *[[ChIP-seq peak profile (analysis)|ChIP-seq peak profile]] | ||
| + | *[[Change profile cutoffs (analysis)|Change profile cutoffs]] | ||
| + | *[[Chromosome enrichment (analysis)|Chromosome enrichment]] | ||
| + | *[[Compare site models (analysis)|Compare site models]] | ||
| + | *[[Construct IPS CisModule (analysis)|Construct IPS CisModule]] | ||
| + | *[[Convert site models to proteins (analysis)|Convert site models to proteins]] | ||
| + | *[[Convert table to track (analysis)|Convert table to track]] | ||
| + | *[[Create IPS model (analysis)|Create IPS model]] | ||
| + | *[[Create Match model (analysis)|Create Match model]] | ||
| + | *[[Create profile from gene table (analysis)|Create profile from gene table]] | ||
| + | *[[Create profile from table (analysis)|Create profile from table]] | ||
| + | *[[Create weight matrix model (analysis)|Create weight matrix model]] | ||
| + | *[[Filter one track by another (analysis)|Filter one track by another]] | ||
| + | *[[Filter track by condition (analysis)|Filter track by condition]] | ||
| + | *[[GC island finder (analysis)|GC island finder]] | ||
| + | *[[Gene set to track (analysis)|Gene set to track]] | ||
| + | *[[Genome coverage (analysis)|Genome coverage]] | ||
| + | *[[Heterozygous site caller (analysis)|Heterozygous site caller]] | ||
| + | *[[IPS motif discovery (analysis)|IPS motif discovery]] | ||
| + | *[[Join tracks (analysis)|Join tracks]] | ||
| + | *[[Merge track statistics (analysis)|Merge track statistics]] | ||
| + | *[[MicroRNA aligner (analysis)|MicroRNA aligner]] | ||
| + | *[[Motif quality analysis|Motif quality analysis]] | ||
| + | *[[Preprocess raw reads (analysis)|Preprocess raw reads]] | ||
| + | *[[Process track with sites (analysis)|Process track with sites]] | ||
| + | *[[Read counter (analysis)|Read counter]] | ||
| + | *[[Run MACS 1.3.7 on ChiP-Seq (analysis)|Run MACS 1_3_7 on ChiP-Seq]] | ||
| + | *[[Run MACS 1.4.0 on ChiP-Seq (analysis)|Run MACS 1_4_0 on ChiP-Seq]] | ||
| + | *[[SNP matching (analysis)|SNP matching]] | ||
| + | *[[Site counts in repeats (analysis)|Site counts in repeats]] | ||
| + | *[[Site search on gene set (analysis)|Site search on gene set]] | ||
| + | *[[Site search on track (analysis)|Site search on track]] | ||
| + | *[[Site search result optimization (analysis)|Site search result optimization]] | ||
| + | *[[Site search summary (analysis)|Site search summary]] | ||
| + | *[[Track coverage (analysis)|Track coverage]] | ||
| + | *[[Track statistics (analysis)|Track statistics]] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Revision as of 11:08, 7 May 2013
- ID
- ru.biosoft.bsa
- Name
- Bio-sequences analyses plugin
- Provider
- Institute of Systems Biology
- Version
- 0.9.4
Analysis methods
Analysis methods defined in this plugin:
- Analysis of Binding Regions
- Analysis of Cis-Regulatory Modules
- Analysis of SNPs and Binding sites
- ChIP-seq peak profile
- Change profile cutoffs
- Chromosome enrichment
- Compare site models
- Construct IPS CisModule
- Convert site models to proteins
- Convert table to track
- Create IPS model
- Create Match model
- Create profile from gene table
- Create profile from table
- Create weight matrix model
- Filter one track by another
- Filter track by condition
- GC island finder
- Gene set to track
- Genome coverage
- Heterozygous site caller
- IPS motif discovery
- Join tracks
- Merge track statistics
- MicroRNA aligner
- Motif quality analysis
- Preprocess raw reads
- Process track with sites
- Read counter
- Run MACS 1_3_7 on ChiP-Seq
- Run MACS 1_4_0 on ChiP-Seq
- SNP matching
- Site counts in repeats
- Site search on gene set
- Site search on track
- Site search result optimization
- Site search summary
- Track coverage
- Track statistics
