Identical best site ROC-curves (analysis)

From BioUML platform
Revision as of 19:00, 13 February 2017 by BioUML wiki Bot (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Analysis title
Default-analysis-icon.png Identical best site ROC-curves
Provider
Institute of Systems Biology
Class
IdenticalBestSiteROCCurves
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Best sites: ROC-curves; union of best sites in single chip-seq track; massive applications to different tracks; summit(yes/no); filtration (yes/no); matrix derivation

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
  • Is around summit – Is around summit
  • Minimal region length – Minimal length of sequence region
  • Matrix – Path to frequency matrix
  • Types of site models – Select site models for comparative analysis
  • Path to output folder – Output folder will be created under this location when it doesn't exist
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox