Find target genes (analysis)

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Analysis title
Default-analysis-icon.png Find target genes
Provider
Institute of Systems Biology
Class
FindTargetGenes
Plugin
biouml.plugins.gtrd (GTRD)

Description

Map sites to the whole/promoter region of transcripts/genes and count them.

Parameters:

  • Input track – Input track
  • ensembl – ensembl
  • Map to – Map to
  • Interval type – Type of interval used to intersect with input sites
  • Upstream – Offset upstream to transcript interval
  • Downstream – Offset downstream to transcript interval
  • Resulting transcripts – Resulting transcripts
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