http://wiki.biouml.org/index.php?title=Features&feed=atom&action=history
Features - Revision history
2024-03-29T15:07:09Z
Revision history for this page on the wiki
MediaWiki 1.20.3
http://wiki.biouml.org/index.php?title=Features&diff=4667&oldid=prev
Stan.lo@dote.ru: /* See also */
2013-06-25T07:53:57Z
<p><span dir="auto"><span class="autocomment">See also</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 07:53, 25 June 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 127:</td>
<td colspan="2" class="diff-lineno">Line 127:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[BioUML]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[BioUML]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [[BioUML_user_interface]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* <span class="plainlinks">[http://wiki.biouml.org/index.php/Category:Analyses Analyses]</span></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* <span class="plainlinks">[http://wiki.biouml.org/index.php/Category:Analyses Analyses]</span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Workflows]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Workflows]]</div></td></tr>
</table>
Stan.lo@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=4666&oldid=prev
Stan.lo@dote.ru: /* Databases */
2013-06-25T07:08:43Z
<p><span dir="auto"><span class="autocomment">Databases</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 07:08, 25 June 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 25:</td>
<td colspan="2" class="diff-lineno">Line 25:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>It works with the main biological databases:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>It works with the main biological databases:</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* catalogues: Ensembl, UniProt, ChEBI, GO;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* catalogues: <ins class="diffchange diffchange-inline">[[</ins>Ensembl<ins class="diffchange diffchange-inline">]]</ins>, <ins class="diffchange diffchange-inline">[http://www.uniprot.org/ </ins>UniProt<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[http://www.ebi.ac.uk/chebi/ </ins>ChEBI<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[[Gene Ontology database|</ins>GO<ins class="diffchange diffchange-inline">]]</ins>;</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* pathways: KEGG, Reactome, EHMN, <del class="diffchange diffchange-inline">BioModels</del>, SABIO-RK, TRANSPATH, EndoNet, BMOND.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* pathways: <ins class="diffchange diffchange-inline">[http://www.genome.jp/kegg/ </ins>KEGG<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[[</ins>Reactome<ins class="diffchange diffchange-inline">]]</ins>, <ins class="diffchange diffchange-inline">[http://www.ehmn.bioinformatics.ed.ac.uk/ </ins>EHMN<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[[Biomodels]]</ins>, <ins class="diffchange diffchange-inline">[http://sabio.villa-bosch.de/ </ins>SABIO-RK<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[http://genexplain.com/transpath-1 </ins>TRANSPATH<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[http://endonet.bioinf.med.uni-goettingen.de/ </ins>EndoNet<ins class="diffchange diffchange-inline">]</ins>, <ins class="diffchange diffchange-inline">[[</ins>BMOND<ins class="diffchange diffchange-inline">]]</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"> </del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Search tools ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Search tools ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
</table>
Stan.lo@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=4662&oldid=prev
Stan.lo@dote.ru: /* See also */
2013-06-24T07:06:27Z
<p><span dir="auto"><span class="autocomment">See also</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 07:06, 24 June 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 129:</td>
<td colspan="2" class="diff-lineno">Line 129:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* <span class="plainlinks">[http://wiki.biouml.org/index.php/Category:Analyses Analyses]</span></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* <span class="plainlinks">[http://wiki.biouml.org/index.php/Category:Analyses Analyses]</span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Workflows]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Workflows]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [[Databases]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Search tools]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Search tools]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[BioUML development history]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[BioUML development history]]</div></td></tr>
</table>
Stan.lo@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=4607&oldid=prev
Stan.lo@dote.ru: /* Search tools */
2013-06-19T06:11:50Z
<p><span dir="auto"><span class="autocomment">Search tools</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 06:11, 19 June 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 31:</td>
<td colspan="2" class="diff-lineno">Line 31:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>BioUML provides powerful search possibilities with such tools as:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>BioUML provides powerful search possibilities with such tools as:</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* [[full text search]] ([http://lucene.apache.org/ Apache Lucene] is used),</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* [[<ins class="diffchange diffchange-inline">Information box#Search|</ins>full text search]] ([http://lucene.apache.org/ Apache Lucene] is used),</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[graph search]] - finds related pathway components and presents results as an editable graph.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[graph search]] - finds related pathway components and presents results as an editable graph.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"> </del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Graph layout engine==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Graph layout engine==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
</table>
Stan.lo@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=4606&oldid=prev
Stan.lo@dote.ru: /* See also */
2013-06-19T06:10:42Z
<p><span dir="auto"><span class="autocomment">See also</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 06:10, 19 June 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 129:</td>
<td colspan="2" class="diff-lineno">Line 129:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* <span class="plainlinks">[http://wiki.biouml.org/index.php/Category:Analyses Analyses]</span></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* <span class="plainlinks">[http://wiki.biouml.org/index.php/Category:Analyses Analyses]</span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Workflows]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[Workflows]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* [[Search tools]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[BioUML development history]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[BioUML development history]]</div></td></tr>
</table>
Stan.lo@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=3782&oldid=prev
Lan@dote.ru: wikipedia: namespace used
2013-05-17T10:34:33Z
<p>wikipedia: namespace used</p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 10:34, 17 May 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 88:</td>
<td colspan="2" class="diff-lineno">Line 88:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Genome browser==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Genome browser==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* uses [<del class="diffchange diffchange-inline">http://en.</del>wikipedia<del class="diffchange diffchange-inline">.org/wiki/Ajax_</del>(programming) AJAX] and [<del class="diffchange diffchange-inline">http://en.</del>wikipedia<del class="diffchange diffchange-inline">.org/wiki/Canvas_element </del>HTML5 <canvas>] technologies (BioUML web edition);</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* uses [<ins class="diffchange diffchange-inline">[</ins>wikipedia<ins class="diffchange diffchange-inline">:Ajax </ins>(programming)<ins class="diffchange diffchange-inline">|</ins>AJAX<ins class="diffchange diffchange-inline">]</ins>] and [<ins class="diffchange diffchange-inline">[</ins>wikipedia<ins class="diffchange diffchange-inline">:Canvas element|</ins>HTML5 <canvas><ins class="diffchange diffchange-inline">]</ins>] technologies (<ins class="diffchange diffchange-inline">[[</ins>BioUML web edition<ins class="diffchange diffchange-inline">]]</ins>);</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* interactive - dragging, semantic zoom;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* interactive - dragging, semantic zoom;</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* DAS support (Distributed Annotation System);</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* DAS support (Distributed Annotation System);</div></td></tr>
</table>
Lan@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=2831&oldid=prev
Lan@dote.ru: {{R}} /* Supported standards */
2013-05-08T04:06:21Z
<p>{{R}} - <span dir="auto"><span class="autocomment">Supported standards</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 04:06, 8 May 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 20:</td>
<td colspan="2" class="diff-lineno">Line 20:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>   </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>   </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>BioUML also supports '''JavaScript''' (script console, JavaSsript editor, JavaScript debugger (BioUML workbench only), JavaScript preprocessor (allows to embed easily R expressions), '''R''' (connect to R on local or remote machine, convert BioUML data to R and save R results as BioUML data, R graphics support, R preprocessor for JavaScript) and '''SQL''' (SQL console, direct SQL access to analysis results tables).</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>BioUML also supports '''JavaScript''' (script console, JavaSsript editor, JavaScript debugger (BioUML workbench only), JavaScript preprocessor (allows to embed easily R expressions), '''<ins class="diffchange diffchange-inline">{{</ins>R<ins class="diffchange diffchange-inline">}}</ins>''' (connect to R on local or remote machine, convert BioUML data to R and save R results as BioUML data, R graphics support, R preprocessor for JavaScript) and '''SQL''' (SQL console, direct SQL access to analysis results tables).</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Databases ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Databases ==</div></td></tr>
</table>
Lan@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=2818&oldid=prev
Lan@dote.ru: Links to optimization methods /* Parameters fitting */
2013-05-07T09:56:17Z
<p>Links to optimization methods - <span dir="auto"><span class="autocomment">Parameters fitting</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 09:56, 7 May 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 78:</td>
<td colspan="2" class="diff-lineno">Line 78:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* constraint support;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* constraint support;</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* different optimization methods:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* different optimization methods:</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** Adaptive Simulating Annealing,</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** <ins class="diffchange diffchange-inline">[[Adaptive simulated annealing (analysis)|</ins>Adaptive Simulating Annealing<ins class="diffchange diffchange-inline">]]</ins>,</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** Cellular genetic algorithm,</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** <ins class="diffchange diffchange-inline">[[</ins>Cellular genetic algorithm <ins class="diffchange diffchange-inline">(analysis)|Cellular genetic algorithm]]</ins>,</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** Evolution strategy (SRES),</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** <ins class="diffchange diffchange-inline">[[</ins>Evolution strategy (SRES) <ins class="diffchange diffchange-inline">(analysis)|Evolution strategy (SRES)]]</ins>,</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** GLBSOLVE,</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** <ins class="diffchange diffchange-inline">[[</ins>GLBSOLVE <ins class="diffchange diffchange-inline">(analysis)|GLBSOLVE]]</ins>,</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** Particle swarm optimization,</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** <ins class="diffchange diffchange-inline">[[</ins>Particle swarm optimization <ins class="diffchange diffchange-inline">(analysis)|Particle swarm optimization]]</ins>,</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** Quadratic Hill-climbing;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** <ins class="diffchange diffchange-inline">[[Quadratic Hill-climbing (analysis)|</ins>Quadratic Hill-climbing<ins class="diffchange diffchange-inline">]]</ins>;</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* optimization and parallelization of computations;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* optimization and parallelization of computations;</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* JavaScript API for parameters fitting;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* JavaScript API for parameters fitting;</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Genome browser==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Genome browser==</div></td></tr>
</table>
Lan@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=2084&oldid=prev
Lan@dote.ru: Link to workflows /* Other features */
2013-05-04T05:52:52Z
<p>Link to workflows - <span dir="auto"><span class="autocomment">Other features</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 05:52, 4 May 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 109:</td>
<td colspan="2" class="diff-lineno">Line 109:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Other features==  </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Other features==  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>BioUML also allows for '''workflows, reproducible research'''</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>BioUML also allows for '''<ins class="diffchange diffchange-inline">[[</ins>workflows<ins class="diffchange diffchange-inline">]]</ins>, reproducible research'''</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* actions journal,</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* actions journal,</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Analysis,</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Analysis,</div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 125:</td>
<td colspan="2" class="diff-lineno">Line 125:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Variables</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Variables</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* ODE(model as differential equation system).</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* ODE(model as differential equation system).</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==See also==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==See also==</div></td></tr>
</table>
Lan@dote.ru
http://wiki.biouml.org/index.php?title=Features&diff=2083&oldid=prev
Lan@dote.ru: BSA link fixed /* Analyses */
2013-05-04T05:52:07Z
<p>BSA link fixed - <span dir="auto"><span class="autocomment">Analyses</span></span></p>
<table class='diff diff-contentalign-left'>
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr style='vertical-align: top;'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 05:52, 4 May 2013</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 101:</td>
<td colspan="2" class="diff-lineno">Line 101:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>BioUML utilizes a wide variety of '''methods for data analyses''':</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>BioUML utilizes a wide variety of '''methods for data analyses''':</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* [[:BSA (analyses group)|biosequence analysis]],</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* [[<ins class="diffchange diffchange-inline">:Category</ins>:BSA (analyses group)|biosequence analysis]],</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[:Category:Optimization (analyses group)|model optimization]],</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[:Category:Optimization (analyses group)|model optimization]],</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[:Category:Statistics (analyses group)|statistics]],</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[:Category:Statistics (analyses group)|statistics]],</div></td></tr>
</table>
Lan@dote.ru