Distinct TF classes (analysis)

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Analysis title
Default-analysis-icon.png Distinct TF classes
Provider
Institute of Systems Biology
Class
DistinctTFClasses
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Distinct TF classes: Identification of their binding regions as cisModules2 of their repeated tracks

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
  • Species – Select a taxonomical species
  • Minimal number of overlaps – Minimal number of overlaps
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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