Create weight matrix model (analysis)

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Analysis title
Motif-discovery-Create-weight-matrix-model-icon.png Create weight matrix model
Provider
Institute of Systems Biology
Class
CreateWeightMatrixModel
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Creates weight matrix site model.

Parameters:

  • Position frequency matrix – Position frequency matrix
  • Model type – Type of site model
  • Threshold – Threshold
  • Nucleotide frequencies – Nucleotide frequencies in background sequence
    • a – a
    • c – c
    • g – g
    • t – t
  • Output collection – Collection where site model will be saved
  • Model name – The name of model name to create
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