Count reads in transcripts (analysis)

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Analysis title
Default-analysis-icon.png Count reads in transcripts
Provider
Institute of Systems Biology
Class
CountReadsInTranscripts
Plugin
biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)

Description

For each transcript count the number mapped NGS reads from BAM file

Parameters:

  • BAM track – BAM track with read alignments
  • Ensembl – Ensembl database
  • Transcript subset – Calculate read count only for these transcripts
  • Output table – Output table with read counts for each transcript
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