CNVnator genotype output (file format)

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File format title
CNVnator genotype output (*.genotype)
Element type
Type-track-icon.png track
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

CNVnator genotype output (*.genotype)

These files produced by CNVnator software. Each output file is space-separated text file, which consists of the following columns:

  1. "Genotype" word
  2. Chromosomic position like "chr1:99801-100600"
  3. Source
  4. Number of copies
  5. Number of copies for low coverage samples

Example:

Genotype chrM:1-16600 5173T.root 576.984 563.799
Genotype chr1:1-13000 5173T.root 0.377524 0.368896
Genotype chr1:17601-51400 5173T.root 0.178211 0.174139
Genotype chr1:53301-54000 5173T.root 0.174089 0.170111
Genotype chr1:64201-64600 5173T.root 0.195805 0.19133

References

  1. Gersteinlab home page
  2. CNVnator download page
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