Difference between revisions of "BioUML wiki"

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Welcome to BioUML wiki! Now it is the main web site for BioUML platform.
 
Welcome to BioUML wiki! Now it is the main web site for BioUML platform.
  
BioUML is an open source integrated Java platform for building virtual cell and virtual physiological human. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (Eclipse run time from IBM is used) allows to add new functionality using plug-ins.
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BioUML - Biological Universal Modelling Language - is an integrated Java platform for biomedical research. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (OSGI) allows to add new functionality using plug-ins.
  
 
Currently we have '''[[:Special:Statistics|{{NUMBEROFARTICLES}} articles]]'''.
 
Currently we have '''[[:Special:Statistics|{{NUMBEROFARTICLES}} articles]]'''.
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=== Try BioUML web edition ===
 
=== Try BioUML web edition ===
* Test server (free)  http://ie.biouml.org/bioumlweb/
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* Main web server (free)  http://ict.biouml.org
* Commercial server (free and licensed) http://genexplain-platform.com/bioumlweb/
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* Commercial server (free and licensed) http://platform.genexplain.com/bioumlweb/
* '''Server for Colon cancer project''' http://ge.mimomics.it/bioumlweb/
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(Colon Cancer Public datasets)
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(SysCol project)
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===Miscellaneous===
 
===Miscellaneous===
 
* [[Tests]]
 
* [[Tests]]
 
* [[Presentations]]
 
* [[Presentations]]
* [http://www.biouml.net/vc/agenda.shtml Presentations] (video, slides)  
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* [http://www.biouml.org/vc/agenda.shtml Presentations] (video, slides)  
 
from workshop "From virtual cell to virtual human and virtual patient"
 
from workshop "From virtual cell to virtual human and virtual patient"
  
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=== Examples ===
 
=== Examples ===
* [[Metabolic control analysis]]
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* [[DAE Models examples]]
* [[Quasi-steady-state approximation]]
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* [[Optimization examples]]
* [[Sensitivity analysis]]
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* [[Population models examples]]
* [[Flux balance analysis]]
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* [[SBGN examples]]
 
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* [[SedML examples]]
 
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Latest revision as of 17:25, 5 August 2020

Welcome to BioUML wiki! Now it is the main web site for BioUML platform.

BioUML - Biological Universal Modelling Language - is an integrated Java platform for biomedical research. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (OSGI) allows to add new functionality using plug-ins.

Currently we have 1,022 articles.

[edit] For BioUML users

[edit] For administrators/developers


[edit] Try BioUML web edition

[edit] Miscellaneous

from workshop "From virtual cell to virtual human and virtual patient"

[edit] Community


[edit] Editing this wiki

To edit this wiki you have to register in BioStore.

Consult the User's Guide for information on using the wiki software.

[edit] Examples


Acknowledgements

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