Visual modeling - Revision history

Lan@dote.ru at 10:36, 12 September 2013

2013-09-12T10:36:52Z

Lan@dote.ru at 10:36, 12 September 2013

2013-09-12T10:36:08Z

Lan@dote.ru: Typo

2013-09-12T09:30:42Z

Typo

Lan@dote.ru at 09:30, 12 September 2013

2013-09-12T09:30:26Z

Axec@dote.ru: Created page with "

Visual modeling in BioUML

Fig 1.BioUML interface for visual modeling Visual diagram editing interface is represented on fig.1. It c..."

2013-09-11T11:02:47Z

Created page with "<h2>Visual modeling in BioUML</h2> Fig 1.BioUML interface for visual modeling Visual diagram editing interface is represented on fig.1. It c..."

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<h2>Visual modeling in BioUML</h2>
[[File:interface_model.png|thumb|Fig 1.BioUML interface for visual modeling]]
Visual diagram editing interface is represented on fig.1.
It consists of 5 main parts:
<ol>
<li>Repository tree.
<li>Pane for selected diagram.
<li>Toolbar for new elements adding to the diagram. Type of available elements depends on the diagram type.
<li>Editor pane for selected element on the diagram.
<li>Set of tabs for current diagram.
</ol>

<h2>Addign new elements</h2>
[[File:add_species_1.png|thumb|Fig 2.Adding new species to the diagram. Select element on the toolbar and edit properties in the appeared dialog.]]
[[File:add_species_2.png|thumb|Fig 3.Adding new species to the diagram. Species is now added. Select it and change its role (mathematical variable) properties]]

Visual instruction on how to add species see on figs 2 and 3.
To add object to the diagram user should perform next steps:
<ol>
<li>click on the correspondent icon on the toolbar
<li>click on the place for new element on the diagram pane
<li>edit object properties in the appeared dialog
<li>press enter
</ol>

After element is added user may define its additional properties in the editor pane.

<h2> Variable properties editing</h2>
[[File:variables.png|thumb|Fig 4.Variables tab.]]
[[File:parameters.png|thumb|Fig 5.Parameters tab.]]
For model variables editing, BioUML presetn two tabs:
<ul>
<li>Variables (see fig. 4) - for variables which are associated with species, compartments or other elements on the diagram.
<li>Parameters (see fig.5) - other variables.
</ul>

@@ Line 12: / Line 12: @@
 <h2>Adding new elements</h2>
-[[File:add_species_1.png|thumb|Fig 2.Adding new species to the diagram. Select element on the toolbar and edit properties in the appeared dialog.]]
+[[File:Visual adding species to model step 1.png|thumb|Fig 2.Adding new species to the diagram. Select element on the toolbar and edit properties in the appeared dialog.]]
-[[File:add_species_2.png|thumb|Fig 3.Adding new species to the diagram. Species is now added. Select it and change its role (mathematical variable) properties]]
+[[File:Visual adding species to model step 2.png|thumb|Fig 3.Adding new species to the diagram. Species is now added. Select it and change its role (mathematical variable) properties]]
 Visual instruction on how to add species see on figs 2 and 3.

@@ Line 1: / Line 1: @@
 <h2>Visual modeling in BioUML</h2>
-[[File:interface_model.png|thumb|Fig 1.BioUML interface for visual modeling]]
+[[File:Visual modeling interface.png|thumb|Fig 1.BioUML interface for visual modeling]]
 Visual diagram editing interface is represented on fig.1.
 It consists of 5 main parts:

@@ Line 27: / Line 27: @@
 <h2> Variable properties editing</h2>
-[[File:variables.png|thumb|Fig 4.Variables tab.]]
+[[File:BioUML workbench Variables viewpart.png|thumb|Fig 4.Variables tab.]]
-[[File:parameters.png|thumb|Fig 5.Parameters tab.]]
+[[File:BioUML workbench Parameters viewpart.png|thumb|Fig 5.Parameters tab.]]
 For model variables editing, BioUML presetn two tabs:
 <ul>