https://wiki.biouml.org/index.php?action=history&feed=atom&title=Tests 2026-04-23T04:27:54Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Tests&diff=6376&oldid=prev 2015-08-25T04:13:34Z

<p>link fixed</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 04:13, 25 August 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 20:</td> <td colspan="2" class="diff-lineno">Line 20:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Rule based modelling - BioNetGen tests==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Rule based modelling - BioNetGen tests==</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Rule based modelling, using [BioNetGen] approach is under development. Corresponding simulation engine will be available in BioUML version 0.9.5.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Rule based modelling, using <ins class="diffchange diffchange-inline">[</ins>[BioNetGen<ins class="diffchange diffchange-inline">]</ins>] approach is under development. Corresponding simulation engine will be available in BioUML version 0.9.5.</div></td></tr> </table>

Manikitos@yandex.ru https://wiki.biouml.org/index.php?title=Tests&diff=4059&oldid=prev 2013-06-04T05:41:41Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:41, 4 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 8:</td> <td colspan="2" class="diff-lineno">Line 8:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.1.0 ([http://www.biouml.org/sbml_tests/overview%202.1.0.html details])</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.1.0 ([http://www.biouml.org/sbml_tests/overview%202.1.0.html details])</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.0.2 ([http://www.biouml.org/sbml_tests/overview%202.0.2.html details])</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* SBML test suite 2.0.2 ([http://www.biouml.org/sbml_tests/overview%202.0.2.html details])</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&#160;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* SBML test suite 3.0.0 including comp and fbc packages([http://www.biouml.org/sbml_tests/overview%203.0.0.html details])</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;br&gt;http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;br&gt;http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Results for newest SBML test suite 2.3.2 will be available soon. Besides SBML core models they include:</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">* SBML composite hierarchic model tests. </del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">* Flux balance constraint tests.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td></tr> </table>

Axec@dote.ru https://wiki.biouml.org/index.php?title=Tests&diff=2226&oldid=prev 2013-05-06T07:16:07Z

<p>‎<span dir="auto"><span class="autocomment">SBML tests</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 07:16, 6 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 12:</td> <td colspan="2" class="diff-lineno">Line 12:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here you can start any test via [[BioUML web edition]]:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;br&gt;http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;br&gt;http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Results for newest SBML test suite 2.3.2 will be available soon. Besides SBML core models they include:</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* SBML composite hierarchic model tests. </ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* Flux balance constraint tests.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Discrete Stochastic Models Test Suite (DSMTS)==</div></td></tr> </table>

Axec@dote.ru https://wiki.biouml.org/index.php?title=Tests&diff=2060&oldid=prev 2013-04-30T16:00:30Z

<p>Created page with &quot; ==SBML tests== The [http://sbml.org/Software/SBML_Test_Suite SBML Test Suite] is a conformance testing system for [http://sbml.org/ SBML]. It allows developers and users to ...&quot;</p> <p><b>New page</b></p><div><br /> <br /> ==SBML tests==<br /> The [http://sbml.org/Software/SBML_Test_Suite SBML Test Suite] is a conformance testing system for [http://sbml.org/ SBML]. It allows developers and users to test the degree and correctness of SBML support provided in an SBML-compatible software package.<br /> <br /> SBML test suite was used to validate BioUML simulation engines.<br /> &lt;br&gt;Details for BioUML Java simulation engine is available here:<br /> * SBML test suite 2.1.0 ([http://www.biouml.org/sbml_tests/overview%202.1.0.html details])<br /> * SBML test suite 2.0.2 ([http://www.biouml.org/sbml_tests/overview%202.0.2.html details])<br /> <br /> <br /> Here you can start any test via [[BioUML web edition]]:<br /> &lt;br&gt;http://ie.biouml.org/bioumlweb/index.html#de=databases/SBML%20tests.<br /> <br /> ==Discrete Stochastic Models Test Suite (DSMTS)==<br /> The stochastic simulation engine was introduced in BioUML version 0.9.4. It was was tested using [http://code.google.com/p/dsmts/ DSMTS test suite]. <br /> This test suite allows the accuracy of stochastic simulators to be tested against known results.<br /> <br /> Test details are available [http://www.biouml.org/sbml_tests/overview%20dsmts.html here].<br /> <br /> ==Rule based modelling - BioNetGen tests==<br /> Rule based modelling, using [BioNetGen] approach is under development. Corresponding simulation engine will be available in BioUML version 0.9.5.</div>

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