SiteAnalysis (host object) - Revision history

WikiBot: Automatic synchronization with BioUML

2014-12-11T09:18:51Z

Automatic synchronization with BioUML

WikiBot: Protected "SiteAnalysis (host object)": Autogenerated page (‎[edit=sysop] (indefinite))

2013-05-16T07:57:26Z

Protected "SiteAnalysis (host object)": Autogenerated page (‎[edit=sysop] (indefinite))

WikiBot: Host objects added

2013-05-16T07:57:25Z

Host objects added

New page

;Host object name
:siteAnalysis
;Class
:{{Class|ru.biosoft.bsa.analysis.JavaScriptSiteAnalysis}}
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
[[Category:Host objects]]
=== JavaScript host object: ===
ScriptableObject '''siteAnalysis'''

Analyses related to sites, sequences and tracks

==== Functions: ====

* String '''bowtie'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Bowtie (analysis)|Bowtie]]"
* String '''filterCondition'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Filter track by condition (analysis)|Filter track by condition]]"
* String '''filterProfileByGeneSet'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Create profile from gene table (analysis)|Create profile from gene table]]"
* String '''geneOverlap'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Gene overlap statistics (analysis)|Gene overlap statistics]]"
* String '''geneSetToTrack'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Gene set to track (analysis)|Gene set to track]]"
* String '''joinTracks'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Join tracks (analysis)|Join tracks]]"
* String '''mergeStats'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Merge track statistics (analysis)|Merge track statistics]]"
* String '''motifDiscoveryIPS'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[IPS motif discovery (analysis)|IPS motif discovery]]"
* String '''preprocessReads'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Preprocess raw reads (analysis)|Preprocess raw reads]]"
* String '''profileFromTable'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Create profile from table (analysis)|Create profile from table]]"
* String '''siteDistribution'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Site distribution (analysis)|Site distribution]]"
* String '''siteModelsToProteins'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Convert site models to proteins (analysis)|Convert site models to proteins]]"
* String '''tableToTrack'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Convert table to track (analysis)|Convert table to track]]"
* String '''trackCoverage'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Track coverage (analysis)|Track coverage]]"
* String '''trackStats'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
*:Launches analysis "[[Track statistics (analysis)|Track statistics]]"

[[Category:Autogenerated pages]]

@@ Line 32: / Line 32: @@
 *:Launches analysis "[[Preprocess raw reads (analysis)|Preprocess raw reads]]"
 * String '''profileFromTable'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
-*:Launches analysis "[[Create profile from table (analysis)|Create profile from table]]"
+*:Launches analysis "[[Create profile from site model table (analysis)|Create profile from site model table]]"
 * String '''siteDistribution'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
 *:Launches analysis "[[Site distribution (analysis)|Site distribution]]"
@@ Line 43: / Line 43: @@
 * String '''trackStats'''(<nowiki>{</nowiki>parameters<nowiki>}</nowiki>)
 *:Launches analysis "[[Track statistics (analysis)|Track statistics]]"
 [[Category:Autogenerated pages]]