Sspintus@dote.ru: Created page with "==What it does== Using the output of SPAdes (a pair of fasta file and stat file for each of the contigs and scaffolds), it produces a coverage vs. contig plot. Each dot repre..."

2019-03-27T07:24:03Z

Created page with "==What it does== Using the output of SPAdes (a pair of fasta file and stat file for each of the contigs and scaffolds), it produces a coverage vs. contig plot. Each dot repre..."

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==What it does==

Using the output of SPAdes (a pair of fasta file and stat file for each of the contigs and scaffolds), it produces a coverage vs. contig plot. Each dot represent a contig/scaffold. Given a coverage and a length cutoff, sequences that do not meet those criteria are shown in red. Some statistics are also given (N50, N90, median contig/scaffold length) both before and after filtering.

Use the [[Filter SPAdes output]] tool to actually filter sequences.

SPAdes stats - Revision history

Sspintus@dote.ru: Created page with "==What it does== Using the output of SPAdes (a pair of fasta file and stat file for each of the contigs and scaffolds), it produces a coverage vs. contig plot. Each dot repre..."