SNPs in binding regions (analysis) - Revision history

WikiBot: Automatic synchronization with BioUML

2014-12-11T09:17:31Z

Automatic synchronization with BioUML

WikiBot: Protected "SNPs in binding regions (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

2013-06-17T06:38:47Z

Protected "SNPs in binding regions (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

WikiBot: Automatic synchronization with BioUML

2013-06-17T06:38:46Z

Automatic synchronization with BioUML

New page

;Analysis title
:[[File:Default-analysis-icon.png]] SNPs in binding regions
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.bindingregions.analysis.SNPInBindingRegions}}
;Plugin
:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]

==== Description ====
This analysis calculates SNPs in binding regions

==== Parameters: ====

* '''Input track''' – Select input ChIP-seq track (must be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
* '''SNP track''' – Track containing SNPs (sites must have <nowiki>'</nowiki>AltAllele<nowiki>'</nowiki> and <nowiki>'</nowiki>RefAllele<nowiki>'</nowiki> properties)
* '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column)
* '''Output table path''' – Path to the output table

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

@@ Line 13: / Line 13: @@
 ==== Parameters: ====
-* '''Input track''' – Select input ChIP-seq track (must be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
+* '''Input track''' – Select input track (it has to contain the merged binding regions; it can be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis)
 * '''SNP track''' – Track containing SNPs (sites must have <nowiki>'</nowiki>AltAllele<nowiki>'</nowiki> and <nowiki>'</nowiki>RefAllele<nowiki>'</nowiki> properties)
 * '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column)