Repository pane - Revision history

Stan.lo@dote.ru at 08:20, 27 June 2013

2013-06-27T08:20:09Z

Stan.lo@dote.ru: /* See also */

2013-06-24T05:07:24Z

‎See also

Lan@dote.ru: /* See also */

2013-06-21T08:53:34Z

‎See also

Stan.lo@dote.ru at 06:49, 21 June 2013

2013-06-21T06:49:37Z

Stan.lo@dote.ru: /* See also */

2013-06-21T06:42:46Z

‎See also

Stan.lo@dote.ru at 06:40, 21 June 2013

2013-06-21T06:40:20Z

Stan.lo@dote.ru: /* Handling files */

2013-06-20T06:43:42Z

‎Handling files

Stan.lo@dote.ru: /* Handling files */

2013-06-20T06:41:22Z

‎Handling files

Lan@dote.ru: -{{Stub}}

2013-06-10T03:40:19Z

-{{Stub}}

Lan@dote.ru: Links /* Handling files */

2013-06-06T10:45:35Z

Links - ‎Handling files

← Older revision		Revision as of 08:20, 27 June 2013
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	If the menu expands beyond the current visible area, use the horizontal and vertical scrollbars.		If the menu expands beyond the current visible area, use the horizontal and vertical scrollbars.
		+
		+	In the web edition, not more than 50 items are shown at a time within a (sub)directory in the repository tree. To further expand the (sub)directory click on the '''Load next 50''' icon ([[File:Type-folder-icon.png]]).

	==Handling data elements==		==Handling data elements==

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 * [[Element type]]
 * [[:Category:Document types|Document type]]
 [[Category:User interface]]

@@ Line 52: / Line 52: @@
 == See also ==
 * [[BioUML user interface]]
-* [[Element_type]]
+* [[Element type]]
 * [[:Category:Document types|Document type]]
 [[Category:User interface]]

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 [[File:Expand_item.png|thumb|A part of the file tree showing an item (folder 'results') collapsed and expanded]]
-Menu items containing one or more files (file collections) can be expanded/collapsed to show/hide their sublevels. Any such item, like a database, a folder, a track or a matrix library, has a white horizontal arrowhead to the left of its icon and name in the file tree area.
+Menu items containing one or more data elements (data collections) can be expanded/collapsed to show/hide their sublevels. Any such item, like a database, a folder, a track or a matrix library, has a white horizontal arrowhead to the left of its icon and name in the repository pane.
 To expand an item
@@ Line 16: / Line 16: @@
 To collapse an item
 *click on the black downward arrowhead next to the icon and name of the expanded item, or
-*click on the item name and then on the '''Expand/collapse''' icon in the [[repository pane toolbar]] above, or
+*click on the item name and then on the '''Expand/collapse''' icon in the repository pane toolbar above, or
 *right-click on the item and select the '''Expand/collapse''' option from the context menu
 If the menu expands beyond the current visible area, use the horizontal and vertical scrollbars.
-==Handling files==
+==Handling data elements==
-When the mouse pointer hovers over a file, the file name will gain a faint-bluish background.
+When the mouse pointer hovers over a data element, the element name will gain a faint-bluish background.
-Upon a single click on a file name, its background will turn into a persistent light blue, and '''information about this file''' will be displayed in the property inspector tab of the [[information box]].
+Upon a single click on the element name, its background will turn into a persistent light blue, and '''information about this file''' will be displayed in the property inspector tab of the [[information box]].
-Double-clicking on a file name will '''open''' it under a new tab in the [[document pane]], and the file name will be emphasized in bold as long as the corresponding tab is in the document pane’s foreground. Only files with an icon attached can be opened this way.
+Double-clicking on the element name will '''open''' it under a new tab in the [[document pane]], and the its name will be emphasized in bold as long as the corresponding tab is in the document pane’s foreground. Only data elements with an icon attached can be opened this way.
-Files can also be opened by:
+Data elements can also be opened by:
-*clicking on the file name and pressing the '''Open...''' icon ([[File:WebAction-tree-open_web-icon.png]]) in the [[repository pane toolbar]], or
+*clicking on the item's name and pressing the '''Open...''' icon ([[File:WebAction-tree-open_web-icon.png]]) in the [[repository pane toolbar]], or
-*right-clicking on the file name and selecting the '''Open...''' option ([[File:WebAction-tree-open_web-icon.png]]) from the context menu.
+*right-clicking on the name and selecting the '''Open...''' option ([[File:WebAction-tree-open_web-icon.png]]) from the context menu.
-Similarly, you can '''delete''' chosen files by clicking on the '''Remove''' option ([[File:WebAction-tree-remove_element-icon.png]]) in the [[repository pane toolbar]] or the context menu.
+Similarly, you can '''delete''' chosen elements by clicking on the '''Remove''' option ([[File:WebAction-tree-remove_element-icon.png]]) in the [[repository pane toolbar]] or the context menu.
 {|

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 == See also ==
 * [[BioUML user interface]]
 [[Category:User interface]]

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 [[File:Workbench_user_interface.png|thumb|[[BioUML workbench]] interface. Repository pane is marked as (A).]]
-'''Repository pane''' (or '''navigation pane''', or simply '''tree''') is the user interface element which present both in [[BioUML workbench]] and [[BioUML web edition]] in left-top part. It represents hierarchical structure of BioUML [[repository]]. Depending on BioUML installation and current [[perspective]] it may include several tabs, each of them containing the tree of collections and elements. Predefined databases, user data, analysis methods and many more can be found in this tree. When you select an element by single mouse click, an information about this element is displayed in the [[information box]] and [[repository pane toolbar]] is updated reflecting context actions available for given element. The same context actions are available upon right mouse click. When you double-click on tree element, default action will be executed like opening of a document.
+'''Repository pane''' (or '''navigation pane''', or simply '''tree''') is the user interface element which is present both in [[BioUML workbench]] and [[BioUML web edition]] in the top left part of the window. It represents the hierarchical structure of the BioUML [[repository]]. Depending on BioUML installation and the current [[perspective]] it can include several tabs, each of them containing a tree of collections and elements. Typically, predefined [[databases]], user data, analysis methods and user lists for shared projects can be found under the tabs of the repository pane. When you select an element by a single mouse click, information about this element is displayed in the [[information box]] and the [[repository pane toolbar]] is updated reflecting the context actions available for the given element. The same context actions are available from the context menu upon a right mouse click. When you double-click on a tree element, the default action will be executed like opening the document.
 ==Navigating within the repository pane==

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 {|
 |style="width:70%; background-color: LightPink;" align="center"|
-'''Attention! Deleted data elements and collections cannot be restored in BioUML!'''
+'''Attention! Deleted data elements and collections cannot be restored in BioUML! Please, be careful to avoid data loss'''
 |}

@@ Line 29: / Line 29: @@
 Files can also be opened by:
-*clicking on the file name and pressing the '''Open...''' icon in the [[repository pane toolbar]], or
+*clicking on the file name and pressing the '''Open...''' icon ([[File:WebAction-tree-open_web-icon.png]]) in the [[repository pane toolbar]], or
-*right-clicking on the file name and selecting the '''Open...''' option from the context menu.
+*right-clicking on the file name and selecting the '''Open...''' option ([[File:WebAction-tree-open_web-icon.png]]) from the context menu.
-Similarly, you can '''delete''' chosen files by clicking on the '''Remove''' option in the [[repository pane toolbar]] or the context menu.
+Similarly, you can '''delete''' chosen files by clicking on the '''Remove''' option ([[File:WebAction-tree-remove_element-icon.png]]) in the [[repository pane toolbar]] or the context menu.
 Most files can be '''exported'''. When the function is activated, a selection of different formats is provided for the export file to be generated. It is also available through the icon [[File:WebAction-tree-export_element-icon.png]] in the [[repository pane toolbar]]