https://wiki.biouml.org/index.php?action=history&feed=atom&title=Report_generator_for_quality_control_analysis 2026-04-13T04:43:01Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Report_generator_for_quality_control_analysis&diff=8726&oldid=prev 2020-12-09T11:14:43Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 11:14, 9 December 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Report generator for quality control analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Report generator for quality control analysis<ins class="diffchange diffchange-inline">.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Parameters: ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Parameters: ====</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 35:</td> <td colspan="2" class="diff-lineno">Line 35:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category:<del class="diffchange diffchange-inline">GTRD </del>(analyses group)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category:<ins class="diffchange diffchange-inline">ChIP-seq </ins>(analyses group)]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:ISB analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:ISB analyses]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Report_generator_for_quality_control_analysis&diff=7768&oldid=prev 2019-03-12T09:33:19Z

<p>Protected &quot;<a href="/index.php/Report_generator_for_quality_control_analysis" title="Report generator for quality control analysis">Report generator for quality control analysis</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 09:33, 12 March 2019</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Report_generator_for_quality_control_analysis&diff=7764&oldid=prev 2019-03-12T09:33:18Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Default-analysis-icon.png]] Report generator for quality control analysis<br /> ;Provider<br /> :[[Institute of Systems Biology]]<br /> ;Class<br /> :{{Class|biouml.plugins.gtrd.analysis.QCAnalysisReportGenerator}}<br /> ;Plugin<br /> :[[Biouml.plugins.gtrd (plugin)|biouml.plugins.gtrd (GTRD)]]<br /> <br /> ==== Description ====<br /> Report generator for quality control analysis<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Data Type''' – Select data Type<br /> * '''ChIP-seq raw data processing parameters''' – ChIP-seq raw data processing parameters<br /> ** '''Experiment library layout''' – Experiment library layout<br /> ** '''FASTQ-file''' – ChIP-seq raw data<br /> ** '''Has Input Control?''' – Has Input Control?<br /> ** '''Input control library layout''' – Input control library layout<br /> ** '''Reference Genome''' – Reference Genome<br /> * '''Select BED-files''' – Select BED-files<br /> * '''FPCM and FNCM Estimation Parameters''' – FPCM and FNCM Estimation Parameters<br /> ** '''Minimal length of binding region''' – Binding regions shorter than the minimal length would be extended<br /> ** '''Maximal length of binding region''' – Binding regions longer than the minimal length would be narrowed<br /> ** '''FPCM threshold''' – If the FPCM exceeds the threshold FNCM will be calculated based on Chapman’s estimate<br /> ** '''Calculate AUC?''' – Calculate AUC?<br /> ** '''AUC Calculation Parameters''' – AUC Calculation Parameters<br /> *** '''Path to folder with site models''' – Select a folder with transcription factor binding sites (TFBSs) models<br /> *** '''Site model name''' – Select a TFBS model name<br /> *** '''Sequences collection''' – Select a source of nucleotide sequences<br /> **** '''Sequences source''' – Select database to get sequences from or &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; to specify sequences location manually<br /> **** '''Sequence collection''' – Specify path to folder containing sequences if &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; sequences source is selected<br /> * '''Path to output folder''' – Path to output folder<br /> <br /> [[Category:Analyses]]<br /> [[Category:GTRD (analyses group)]]<br /> [[Category:ISB analyses]]<br /> [[Category:Autogenerated pages]]</div>

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