Reference type - Revision history

Lan@dote.ru: Link to table element

2013-06-06T10:40:19Z

Link to table element

Lan@dote.ru at 08:06, 4 June 2013

2013-06-04T08:06:07Z

Lan@dote.ru: Created page with "'''Reference type''' is a sort of accession numbers of any biological objects which may be handled by BioUML. An example of reference type is [[Genes - Ensembl|Ensembl gen..."

2013-05-15T03:39:08Z

Created page with "'''Reference type''' is a sort of accession numbers of any biological objects which may be handled by BioUML. An example of reference type is [[Genes - Ensembl|Ensembl gen..."

New page

'''Reference type''' is a sort of accession numbers of any biological objects which may be handled by [[BioUML]]. An example of reference type is [[Genes - Ensembl|Ensembl gene ID]] (like ENSG00000000003). The following features are available when you define the reference type:
* Type can be assigned to user-imported tables;
* Type can be autodetected based on table IDs pattern;
* IDs in the table may be displayed as links to an external database (e.g. Ensembl);
* You can create an [[method (extension point)|analysis method]] which will restrict input tables to given type;
* You can create [[matching BioHub]] to convert identifiers from your type to other types and vice versa via [[Convert table (analysis)|Convert table]] analysis;
* You can assign this type to your database collections and use this for [[Annotate table (analysis)|Annotate table]] analysis.

Every reference type has its display name. Usually it consists of two parts like <code>"Genes: Ensembl"</code> where first part ("Genes") is an object type and the second part ("Ensembl") is the reference source (database name).

To create your own reference type use the corresponding [[Reference type (extension point)|extension point]].

=== See also ===
* [[:Category:Reference types|List of reference types]]

@@ Line 1: / Line 1: @@
 '''Reference type''' is a sort of accession numbers of any biological objects which may be handled by [[BioUML]]. An example of reference type is [[Genes - Ensembl|Ensembl gene ID]] (like ENSG00000000003). The following features are available when you define the reference type:
-* Type can be assigned to user-imported tables;
+* Type can be assigned to user-imported {{Type link|table}}s;
 * Type can be autodetected based on table IDs pattern;
 * IDs in the table may be displayed as links to an external database (e.g. Ensembl);

@@ Line 11: / Line 11: @@
 To create your own reference type use the corresponding [[Reference type (extension point)|extension point]].
-=== See also ===
+=== Reference types hierarchy ===
-* [[:Category:Reference types|List of reference types]]
+{{Reference types}}