https://wiki.biouml.org/index.php?action=history&feed=atom&title=Reduce_CMA_results_%28analysis%29 2026-04-13T03:26:44Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Reduce_CMA_results_(analysis)&diff=8743&oldid=prev 2020-12-09T11:14:45Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 11:14, 9 December 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">Reduces </del>resulting CMA model <del class="diffchange diffchange-inline">trying </del>to <del class="diffchange diffchange-inline">remove </del>insignificant site models.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">This method is trying to reduce the </ins>resulting CMA model <ins class="diffchange diffchange-inline">by excluding some matrices from the model and recalculating the score. If the new score appears </ins>to <ins class="diffchange diffchange-inline">be better, then the reduced model is kept if the score change threshold is below the one, which was specified during the analysis launch. As a result, the method will reduce the resulting CMA model by removing the </ins>insignificant site models.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Parameters: ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Parameters: ====</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 19:</td> <td colspan="2" class="diff-lineno">Line 19:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category:<del class="diffchange diffchange-inline">BSA </del>(analyses group)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category:<ins class="diffchange diffchange-inline">Composite module analyses </ins>(analyses group)]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:GeneXplain analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:GeneXplain analyses]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Reduce_CMA_results_(analysis)&diff=7702&oldid=prev 2019-03-12T09:32:02Z

<p>Protected &quot;<a href="/index.php/Reduce_CMA_results_(analysis)" title="Reduce CMA results (analysis)">Reduce CMA results (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 09:32, 12 March 2019</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Reduce_CMA_results_(analysis)&diff=7701&oldid=prev 2019-03-12T09:31:57Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Default-analysis-icon.png]] Reduce CMA results<br /> ;Provider<br /> :[[geneXplain GmbH]]<br /> ;Class<br /> :{{Class|biouml.plugins.cma.analysis.CMAPruner}}<br /> ;Plugin<br /> :[[Biouml.plugins.cma (plugin)|biouml.plugins.cma (Composite module analyst)]]<br /> <br /> ==== Description ====<br /> Reduces resulting CMA model trying to remove insignificant site models.<br /> <br /> ==== Parameters: ====<br /> <br /> * '''CMA result''' – Result of the construct composite modules analysis<br /> * '''Score change threshold''' – Threshold of score change<br /> * '''Max iterations''' (expert) – Maximal number of iterations (maximal number of site models to remove)<br /> * '''Output path''' – Path to analysis result<br /> <br /> [[Category:Analyses]]<br /> [[Category:BSA (analyses group)]]<br /> [[Category:GeneXplain analyses]]<br /> [[Category:Autogenerated pages]]</div>

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