https://wiki.biouml.org/index.php?action=history&feed=atom&title=Reads_to_matrices_%28workflow%29 2026-04-25T11:55:54Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Reads_to_matrices_(workflow)&diff=3703&oldid=prev 2013-05-16T10:23:50Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 10:23, 16 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 14:</td> <td colspan="2" class="diff-lineno">Line 14:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:BED file containing control reads</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:BED file containing control reads</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Sequences source</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Sequences source</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:Select Ensembl version which corresponds to your input data</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Output folder</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Output folder</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:Folder to store output</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:Folder to store output</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Reads_to_matrices_(workflow)&diff=3695&oldid=prev 2013-05-16T10:08:31Z

<p>Protected &quot;<a href="/index.php/Reads_to_matrices_(workflow)" title="Reads to matrices (workflow)">Reads to matrices (workflow)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 10:08, 16 May 2013</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Reads_to_matrices_(workflow)&diff=3693&oldid=prev 2013-05-16T10:08:30Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Workflow title<br /> :Reads to matrices<br /> ;Provider<br /> :[[Autosome.Ru]]<br /> == Workflow overview ==<br /> [[File:Reads-to-matrices-workflow-overview.png|400px]]<br /> == Description ==<br /> This workflow allows you to upload BED file which contains aligned reads, run the [http://liulab.dfci.harvard.edu/MACS/ MACS] peak finder, remove too short peaks and run ChIPMunk analysis to predict the motifs.<br /> <br /> == Parameters ==<br /> ;Experiment track (BED)<br /> :BED file containing experimental data<br /> ;Control track (BED)<br /> :BED file containing control reads<br /> ;Sequences source<br /> ;Output folder<br /> :Folder to store output<br /> <br /> [[Category:Workflows]]<br /> [[Category:Autosome.Ru workflows]]<br /> [[Category:Autogenerated pages]]</div>

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