https://wiki.biouml.org/index.php?action=history&feed=atom&title=RNA-Seq_analysis 2026-04-13T17:16:36Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=RNA-Seq_analysis&diff=8722&oldid=prev 2020-12-09T11:14:41Z

<p>Protected &quot;<a href="/index.php/RNA-Seq_analysis" title="RNA-Seq analysis">RNA-Seq analysis</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 11:14, 9 December 2020</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=RNA-Seq_analysis&diff=8721&oldid=prev 2020-12-09T11:14:41Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Default-analysis-icon.png]] RNA-Seq analysis<br /> ;Provider<br /> :[[Institute of Systems Biology]]<br /> ;Class<br /> :{{Class|biouml.plugins.bindingregions.analysis.RnaSeqAnalysis}}<br /> ;Plugin<br /> :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]<br /> <br /> ==== Description ====<br /> Analysis of RNA-Seq data. Correspondence between expression levels and GTRD ChIP-Seq peaks<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Option''' – Please, select option (i.e. select the concrete session of given analysis).<br /> * '''Parameters for OPTION_01''' – Parameters for OPTION_01<br /> ** '''Sequences collection''' – Select a source of nucleotide sequences<br /> *** '''Sequences source''' – Select database to get sequences from or &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; to specify sequences location manually<br /> *** '''Sequence collection''' – Specify path to folder containing sequences if &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; sequences source is selected<br /> ** '''Path to file''' – Path to input file<br /> * '''Parameters for OPTION_02''' – Parameters for OPTION_02<br /> ** '''Path to folder with tracks''' – Path to folder with tracks<br /> ** '''Track names''' – Please, select track names<br /> ** '''Path to file''' – Path to input file<br /> ** '''Sequences collection''' – Select a source of nucleotide sequences<br /> *** '''Sequences source''' – Select database to get sequences from or &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; to specify sequences location manually<br /> *** '''Sequence collection''' – Specify path to folder containing sequences if &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; sequences source is selected<br /> ** '''Promoter regions''' – Promoter regions<br /> * '''Path to output folder''' – Path to output folder<br /> <br /> [[Category:Analyses]]<br /> [[Category:Binding regions (analyses group)]]<br /> [[Category:ISB analyses]]<br /> [[Category:Autogenerated pages]]</div>

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