https://wiki.biouml.org/index.php?action=history&feed=atom&title=RAGOUT 2026-05-03T16:59:22Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=RAGOUT&diff=8401&oldid=prev 2019-04-04T12:11:59Z

<p>Created page with &quot;==Description== Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (con...&quot;</p> <p><b>New page</b></p><div>==Description==<br /> Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).<br /> <br /> The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.<br /> <br /> Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.<br /> <br /> ==Authors==<br /> * Mikhail Kolmogorov (St. Petersburg University of the Russian Academy of Sciences, UCSD)<br /> * Pavel Avdeev (St. Petersburg University of the Russian Academy of Sciences)<br /> * Dmitriy Meleshko (St. Petersburg University of the Russian Academy of Sciences)<br /> * Son Pham (UCSD)<br /> <br /> [https://github.com/fenderglass/Ragout]</div>

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