Presentations - Revision history

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2016-10-18T06:53:43Z

‎2016

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Axec@dote.ru: /* Presentations on conferences */

2016-10-18T06:23:25Z

‎Presentations on conferences

Lan@dote.ru at 13:37, 13 March 2014

2014-03-13T13:37:16Z

Lan@dote.ru at 05:38, 7 May 2013

2013-05-07T05:38:26Z

Fkolpakov@gmail.com: Created page with "NOTOC ==Selected presentations== * [http://www.biouml.org/presentations/2011-combine-biouml.ppt BioUML - open source integrated platform for collaborative and reproduci..."

2013-05-01T14:16:30Z

Created page with "__NOTOC__ ==Selected presentations== * [http://www.biouml.org/presentations/2011-combine-biouml.ppt BioUML - open source integrated platform for collaborative and reproduci..."

New page

__NOTOC__

==Selected presentations==

* [http://www.biouml.org/presentations/2011-combine-biouml.ppt BioUML - open source integrated platform for collaborative and reproducible research in systems biology] [[Image:new.jpg]] (66 slides, 11 Mb). 
* [http://www.biouml.org/presentations/2010-BGRS-BioUML.ppt BioUML - integrated platform for building virtual cell and virtual physiological human] presented on [http://conf.nsc.ru/BGRSSB2010 BGRS\SB-2010] conference (77 slides, 8.4 Mb). 
* [http://www.biouml.org/help/user/html/index.html?introduction.htm Introduction to BioUML workbench] describes main features and concepts of BioUML workbench: visual modeling, meta-model, formal definition of graphic notations and plug-in based architecture.
 

==Presentations on conferences==

===2011-2013===
{{Draft}}

===2010===

* [http://www.icsb2010.org.uk ICSB-2010] October 11-14, Edinburgh, Scotland 
** Tutorial: '''BioUML - integrated platform for building virtual cell and virtual physiological human''' [http://www.biouml.org/presentations/2010-icsb-biouml-tutorial.ppt MS Power Point presentation], 73 slides, 6.4 Mb, English. 
** Oral report: '''Modular Approach To Modeling Of The Apoptosis Machinery''' Kutumova E.O., Sharipov R.N., Lavrik I.N, Kolpakov F.A. 
** posters about BioUML and its usage for modelling of components of virtual cell and virtual physiological human: 
*** ''BioUML - Integrated Platform for Building Virtual Cell and Virtual Physiological Human'' Kolpakov F.A., Tolstyh N.I., Kutumova E.O., Kiselev I.N., Shadrin A.A., Valeev T.F., Ryabova A. [http://www.biouml.org/presentations/2010-icsb-biouml.ppt MS Power Point presentation], 1 slide, 1.3 Mb, English. 
*** ''Modular Approach To Modeling Of The Apoptosis Machinery'' Kutumova E.O., Sharipov R.N., Kolpakov F.A. [http://www.biouml.org/presentations/2010-icsb-apoptosis.ppt MS Power Point presentation], 1 slide, 1.5 Mb, English. 
*** ''The Optimization Plug-in For The BioUML Platform'' Kutumova E.O., Ryabova A.S., Tolstyh N.I., Kolpakov F.A. [http://www.biouml.org/presentations/2010-icsb-optimisation.ppt MS Power Point presentation], 1 slide, 0.8 Mb, English. 
*** ''Agent based modelling - plug-in for BioUML platform'' Kiselev I.N., Semisalov B.V., Kolpakov F.A. [http://www.biouml.org/presentations/2010-icsb-agent.ppt MS Power Point presentation], 1 slide, 0.8 Mb, English. 
*** ''Numerical analysis of complex model of human blood flow circulation using 1D hemodynamic model'' Leonova T., Biberdorf E.A., Kolpakov F.A., Blokhin A.M., Markel A.L. [http://www.biouml.org/presentations/2010-bgrs-blood-flow.ppt MS Power Point presentation], 1 slide, 0.5 Mb, English. 

* [http://sbml.org/Events/Forums/COMBINE_2010 COMBINE-2010] October 6-9, Edinburgh, Scotland 
** Report: Encoding and exchanging graphical representation: architecture and formats. [http://www.biouml.org/_combine-2010/combine-2010.ppt MS Power Point presentation], 38 slides, 0.9 Mb, English. 
** Report: BioUML - integrated platform for building virtual cell and virtual physiological human [http://www.biouml.org/_combine-2010/BioUML.ppt MS Power Point presentation], 49 slides, 3.5 Mb, English. 
** [http://www.biouml.org/combine-2010.shtml Presentations and supplementary materials] 

* [http://conf.nsc.ru/BGRSSB2010 BGRS\SB-2010 conference] June 20-27, 1010, Novosibirsk, Russia
** oral presentation: '''Modular modeling of the apoptosis machinery''' Kutumova E.O., Sharipov R.N., Lavrik I.N, Kolpakov F.A. [http://www.biouml.org/presentations/2010-BGRS-apoptos.ppt MS Power Point presentation], 52 slides, 7.8 Mb, English. 
** oral presentation: '''BioUML integrated platform for building virtual cell and virtual physiological human''' Kolpakov F.A., Tolstyh N.I., Kutumova E.O., Kiselev I.N., Shadrin A.A., Valeev T.F., Ryabova A., Sharipov R.N., Kel A.E. [http://www.biouml.org/presentations/2010-BGRS-BioUML.ppt MS Power Point presentation], 78 slides, 8.4 Mb, English. 
** posters about BioUML and its usage for modelling of components of virtual cell and virtual physiological human:
*** ''Microarray data analysis plugin for BioUML ''Kiselev I.N., Shadrin A.A., Kolpakov F.A., Kondrakhin Y.V. [http://www.biouml.org/presentations/2010-bgrs-microarray.pdf poster], pdf, 1 Mb, English. 
*** ''Comparison of methods for reconstruction of models for gene expression regulation ''Shadrin A.A., Kiselev I.N., Kolpakov F.A. [http://www.biouml.org/presentations/2010-bgrs-gene-expression.ppt MS Power Point presentation], 1 slide, 0.8 Mb, English. 
*** ''Web-based genome browser using AJAX and canvas technologies ''Valeev T.F., Tolstyh N.I., Kolpakov F.A. [http://www.biouml.org/presentations/2010-bgrs-genome-browser.ppt MS Power Point presentation], 1 slide, 0.5 Mb, English. 
*** ''Simulating pulse wave in 1D hemodynamic model ''Leonova T., Kolpakov F.A., Biberdorf E.A. 
*** ''Numerical analysis of complex model of human blood flow circulation using 1D hemodynamic model ''Leonova T., Biberdorf E.A., Kolpakov F.A., Blokhin A.M., Markel A.L. [http://www.biouml.org/presentations/2010-bgrs-blood-flow.ppt MS Power Point presentation], 1 slide, 0.5 Mb, English.

===2008===

* [http://www.icsb-2008.org The 9th International Conference on Systems Biology (ICSB-2008)] August 22-28, 2008, Gothenburg, Sweden 
** Tutorial: '''New possibilities of BioUML workbench''' [http://www.biouml.org/presentations/2008-ICSB-BioUML%20tutorial.ppt MS Power Point presentation], 151 slides, 7.3 Mb, English. 
** Poster: '''BioUML new concepts and possibilities''' ''Tolstykh N, Lapukhov S., Kiselev I., Shadrin A. and Kolpakov F.'' [http://www.biouml.org/presentations/2008-ICSB-BioUML.ppt MS Power Point presentation], 1 slide A0, 1.1 Mb, English. 

===2004-2007===

{{Draft}}

===2003===

* [http://www.ict.nsc.ru/ws/YM2003 International conference of young scientists on mathematical modeling and informational technologies] November 3-5, 2003, Krasnoyarsk, Russia. Report: BioUML software workbench for visual modeling biological and other complex systems. [http://www.ict.nsc.ru/ws/show_abstract.dhtml?ru+83+6325 Abstract], Russian. 
* [http://www14.in.tum.de/gcb03/ German Conference on Bioinformatics] October 12-14, 2003, Neuherberg/Garching, Germany. Poster: Comprehensive model for formalized description, visualization and simulation of biological systems. [http://www.biouml.org/publications/pdf/gcb_2003.pdf Extended abstract], PDF, 129 kb, English. [http://www.biouml.org/presentations/biouml_gcb_2003.ppt MS Power Point presentation], 1 slide A0, 217 kb, English. 
* [http://www.ict.nsc.ru/ws/elpub2002/index.en.html VIII International Conference "Electronic publicating El-Pub2003"] October 8-10, 2003, Novosibirsk, Russia. Report: BioUML - integrated framework for modeling of biological systems Abstract ([http://www.ict.nsc.ru/ws/show_abstract.dhtml?en+76+6037 English], [http://www.ict.nsc.ru/ws/show_abstract.dhtml?ru+76+6037+ Russian])[http://www.biouml.org/presentations/biouml_el_pub_2003.ppt MS Power Point presentation], 23 slides, 560 kb, Russian. 
* [http://ersnet.org/2/7/7_1.asp European Respiratory Society 13th annual congress] September 27 October 1, 2003, Vienna, Austria. Poster: [https://www.ersnetsecure.org/public/prg_congres.abstract?ww_i_presentation=9389 New approaches to understanding of heavy metals role in pathogeneses of chronic respiratory diseases] (about usage of BioUML workbench for formalized description of heavy metals role in pathogeneses of chronic respiratory diseases) [http://www.biouml.org/publications/pdf/vienna_2003.pdf Poster], PDF, 11 slides, 236 kb, English. 
* [http://www.sbml.org/workshops/tokyotutorial/tutorial.htm Systems Biology Workshop and Tutorial] September 18, 2003, Tokyo, Japan. Poster: BioUML - open source extensible Java workbench for systems biology. [http://www.biouml.org/presentations/biouml_tokyo_2003.ppt MS Power Point presentation], 1 slide, 182 kb, English.

===2002===

* [http://www.ki.se/icsb2002/ 3rd Iinternational Conference on Systems Biology (ICSB-2002)] Poster: Biouml - software framework for systems biology. [http://www.biouml.org/publications/pdf/icsb_2002.pdf Abstract],PDF, 50 kb, English. 
* [http://www.ict.nsc.ru/ws/YM2002 International conference of young scientists on mathematical modeling and informational technologies] October 29-31, 2002, Novosibirsk, Russia. Report: Modeling biological systems using BioUML. [http://www.biouml.org/presentations/biouml_modeling.ppt MS Power Point presentation] 30 slides, 571 kb, Russian. 
* "Science in Siberia" section on SibFair-2002 exhibition October 28-31, 2002, Novosibirsk, Russia. Presentaion: BioUML - universal language for visual modeling of biological systems. [http://www.biouml.org/presentations/biouml_sibmarket.ppt MS Power Point presentation], 41 slides, 1.11 MB, Russian. 
* [http://www.sbras.ru/ws/SIIS2002/index.en.html First Regional Forum ] October, 21-24, 2002, Novosibirsk, Russia. Report: BioUML - integrated extensible framework for modeling of biological systems. 
* [http://www.ict.nsc.ru/ws/elpub2002/index.en.html VII International Conference "Electronic publicating El-Pub2002"] September 23-27, 2002, Novosibirsk, Russia. Report: BioUML - integrated framework for modeling of biological systems [http://www.biouml.org/presentations/biouml_el_pub.ppt MS Power Point presentation], 28 slides, 1.33 MB, Russian. 
* [http://www.bionet.nsc.ru/meeting/bgrs2002 BGRS'2002] - Third International Conference on Bioinformatics of Genome Regulation and Structure. July 14-20, 2002, Novosibirsk, Russia. Computer demonstration: "Using BioUML Framework for Systems Biology". Poster: "BioUML - framework for visual modeling and simulation of biological systems". 
* [http://www.catalysis.nsk.su/chem/medicina/main_p.html New Technologies in Medicine]. June 18-19, 2002, Novosibirsk, Russia. [http://www.catalysis.nsk.su/chem/medicina/_6/6_5.html BioUML - Biological Unified Modeling Language.] 
* [http://www.ncgroup.ru/conference On-line conference "Computer applications in chemistry, biology, pharmaceutics and medicine."] April 17 - June 13, 2002, Moscow, Russia. [http://www.ncgroup.ru/conference/enter/paper.phtml?r=57 BioUML - Biological Unified Modeling Language.]

@@ Line 11: / Line 11: @@
 ===2016===
-* [[:File:20161810_BioUML_platform.pdf]] <br/>
+* [[:File:20161810_BioUML_platform.pdf | BioUML platform ]] <br/>
 Seminar at Novosibirsk State University October 18, Novosibirsk, Russia, 56 slides, 5.2 Mb, Russian.

@@ Line 11: / Line 11: @@
 ===2016===
-* [[File:20161810_BioUML_platform.pdf]] <br/>
+* [[:File:20161810_BioUML_platform.pdf]] <br/>
 Seminar at Novosibirsk State University October 18, Novosibirsk, Russia, 56 slides, 5.2 Mb, Russian.

@@ Line 11: / Line 11: @@
 ===2016===
-* [[ File: 20161810_BioUML_platform.pdf BioUML platform]] <br/>
+* [[File:20161810_BioUML_platform.pdf]] <br/>
 Seminar at Novosibirsk State University October 18, Novosibirsk, Russia, 56 slides, 5.2 Mb, Russian.

@@ Line 11: / Line 11: @@
 ===2016===
-* [20161810_BioUML_platform.pdf BioUML platform] <br/>
+* [[ File: 20161810_BioUML_platform.pdf BioUML platform]] <br/>
 Seminar at Novosibirsk State University October 18, Novosibirsk, Russia, 56 slides, 5.2 Mb, Russian.

@@ Line 11: / Line 11: @@
 ===2016===
-* [File: 20161810_BioUML_platform.pdf BioUML platform] <br/>
+* [20161810_BioUML_platform.pdf BioUML platform] <br/>
 Seminar at Novosibirsk State University October 18, Novosibirsk, Russia, 56 slides, 5.2 Mb, Russian.

← Older revision		Revision as of 06:23, 18 October 2016
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	==Presentations on conferences==		==Presentations on conferences==
		+
		+	===2016===
		+	* [http://biouml.org/presentations/20161810_BioUML_platform.pdf BioUML platform] <br/>
		+	Seminar at Novosibirsk State University October 18, Novosibirsk, Russia, 56 slides, 5.2 Mb, Russian.

	===2014===		===2014===

← Older revision		Revision as of 13:37, 13 March 2014
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	==Presentations on conferences==		==Presentations on conferences==
		+
		+	===2014===
		+	* [http://forum.biouml.org/viewtopic.php?f=1&t=15 BioUML programming]<br/> March 11, Wolfenbüttel, Germany <br/>
		+	** Tutorial: '''BioUML programming'''<br/> [http://biouml.org/presentations/20140311_BioUML_programming.pdf PDF presentation], 38 slides, 0.8 Mb, English.

	===2011-2013===		===2011-2013===

@@ Line 3: / Line 3: @@
 ==Selected presentations==
-* [http://www.biouml.org/presentations/2011-combine-biouml.ppt  BioUML - open source integrated platform for collaborative and reproducible research in systems biology] [[Image:new.jpg]]<br />(66 slides, 11 Mb). <br />
+* [http://www.biouml.org/presentations/2011-combine-biouml.ppt  BioUML - open source integrated platform for collaborative and reproducible research in systems biology] {{New}}<br />(66 slides, 11 Mb). <br />
 * [http://www.biouml.org/presentations/2010-BGRS-BioUML.ppt  BioUML - integrated platform for building virtual cell and virtual physiological human]<br />presented on [http://conf.nsc.ru/BGRSSB2010 BGRS\SB-2010] conference (77 slides, 8.4 Mb). <br />
 * [http://www.biouml.org/help/user/html/index.html?introduction.htm  Introduction to BioUML workbench]<br />describes main features and concepts of BioUML workbench: visual modeling, meta-model, formal definition of graphic notations and plug-in based architecture.

Presentations - Revision history

Axec@dote.ru: /* 2016 */

Axec@dote.ru: /* 2016 */

Axec@dote.ru: /* 2016 */

Axec@dote.ru: /* 2016 */

Axec@dote.ru: /* 2016 */

Axec@dote.ru: /* 2016 */

Axec@dote.ru: /* Presentations on conferences */

Lan@dote.ru at 13:37, 13 March 2014

Lan@dote.ru at 05:38, 7 May 2013

Fkolpakov@gmail.com: Created page with "__NOTOC__ ==Selected presentations== * [http://www.biouml.org/presentations/2011-combine-biouml.ppt BioUML - open source integrated platform for collaborative and reproduci..."

Fkolpakov@gmail.com: Created page with "NOTOC ==Selected presentations== * [http://www.biouml.org/presentations/2011-combine-biouml.ppt BioUML - open source integrated platform for collaborative and reproduci..."