Parameter identifiability (table) (analysis) - Revision history

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;Analysis title
:[[File:Default-analysis-icon.png]] Parameter identifiability (table)
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.optimization.analysis.IdentifiabilityAnalysis}}
;Plugin
:[[Biouml.plugins.optimization (plugin)|biouml.plugins.optimization (Optimization plug-in)]]

==== Description ====
Parameter identifiability which uses tables as input

==== Parameters: ====

* '''Diagram''' – Path to input diagram
* '''Parameters table''' – Table with list of parameters to check identifiability (must contain "Min", "Max", "Val" columns)
* '''Observables table''' – Table with data about observables values and time
* '''Time column''' – Name of the column with time values from the "Observbles table" (will search for "time" if not selected)
* '''Step size''' – Value of default step size during parameter identifiability testing
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction)
* '''Degrees of freedom''' – Number of degrees of freedom
* '''Confidence level''' – Confidence level which is used to define confidence interval
* '''Optimization method parameters''' – Optimization method parameters
** '''Optimization method name''' – Name of optimization method to use
** '''Number of iterations''' – Number of iterations during optimization
** '''Populations size''' – Populations size
** '''Calculation accuracy''' – Calculation accuracy
** '''Grid length''' – Grid length
** '''Grid width''' – Grid width
** '''Number of particles''' – The total number of particles
* '''Weight method''' (expert) – Method which will be used to evaluate weights for objective function
* '''Weights table''' (expert) – Table with data about weights for observable values
* '''Weight column''' (expert) – Name of the column with weights from the "Weights table" (will set weights to 1.0 if not selected)
* '''Output path''' – Path to the output table

[[Category:Analyses]]
[[Category:DAE models (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

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 ==== Description ====
-Parameter identifiability which uses tables as input
+Parameter identifiability which uses tables as input.
 ==== Parameters: ====
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 [[Category:Analyses]]
-[[Category:DAE models (analyses group)]]
+[[Category:Differential algebraic equations (analyses group)]]
 [[Category:ISB analyses]]
 [[Category:Autogenerated pages]]

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 :[[Institute of Systems Biology]]
 ;Class
-:{{Class|biouml.plugins.optimization.analysis.IdentifiabilityAnalysis}}
+:{{Class|biouml.plugins.optimization.analysis.IdentifiabilityOnTableAnalysis}}
 ;Plugin
 :[[Biouml.plugins.optimization (plugin)|biouml.plugins.optimization (Optimization plug-in)]]
@@ Line 17: / Line 17: @@
 * '''Observables table''' – Table with data about observables values and time
 * '''Time column''' – Name of the column with time values from the "Observbles table" (will search for "time" if not selected)
 * '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction)
-* '''Degrees of freedom''' – Number of degrees of freedom
+* '''Maximal deviation''' – Maximal deviation from initial objective function value (delta)
-* '''Confidence level''' – Confidence level which is used to define confidence interval
+* '''Plot element type''' (expert) – Type of created result plot elements
 * '''Optimization method parameters''' – Optimization method parameters
 ** '''Optimization method name''' – Name of optimization method to use