Non-merged ChIP-Seq tracks summary (analysis) - Revision history

WikiBot: Automatic synchronization with BioUML

2015-08-25T05:20:04Z

Automatic synchronization with BioUML

WikiBot: Automatic synchronization with BioUML

2014-12-11T09:17:22Z

Automatic synchronization with BioUML

WikiBot: Automatic synchronization with BioUML

2013-06-17T06:38:46Z

Automatic synchronization with BioUML

WikiBot: Default analysis icon as separate file

2013-06-14T11:07:26Z

Default analysis icon as separate file

WikiBot: Protected "Non-merged ChIP-Seq tracks summary (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

2013-06-06T10:16:44Z

Protected "Non-merged ChIP-Seq tracks summary (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

WikiBot: Automatic synchronization with BioUML

2013-06-06T10:16:43Z

Automatic synchronization with BioUML

New page

;Analysis title
:[[File:Binding-regions-Non-merged-ChIP-Seq-tracks-summary-icon.png]] Non-merged ChIP-Seq tracks summary
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|ru.biosoft.bsa.analysis.bindingRegions.NonmergedChIPSeqSummary}}
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]

==== Description ====
Summary of non-merged ChIP-Seq tracks (creation of tables: <nowiki>'</nowiki>summaryOfTracks<nowiki>'</nowiki>, <nowiki>'</nowiki>summaryOfCellLines<nowiki>'</nowiki>, <nowiki>'</nowiki>summaryOfTfClasses<nowiki>'</nowiki>, <nowiki>'</nowiki>countsOfTfClassesInCellLines<nowiki>'</nowiki>)

==== Parameters: ====

* '''Sequences collection''' – Select a source of nucleotide sequences
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
* '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks
* '''Species''' – Select a taxonomical species
* '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column)
* '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column)
* '''Path to output folder''' – Output folder will be created under this location

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

@@ Line 17: / Line 17: @@
 * '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column)
 * '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column)
-* '''Path to output folder''' – Output folder will be created under this location
+* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
 [[Category:Analyses]]

@@ Line 13: / Line 13: @@
 ==== Parameters: ====
 * '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks
 * '''Species''' – Select a taxonomical species

@@ Line 4: / Line 4: @@
 :[[Institute of Systems Biology]]
 ;Class
-:{{Class|ru.biosoft.bsa.analysis.bindingRegions.NonmergedChIPSeqSummary}}
+:{{Class|biouml.plugins.bindingregions.analysis.NonmergedChIPSeqSummary}}
 ;Plugin
-:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
+:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]
 ==== Description ====

@@ Line 1: / Line 1: @@
 ;Analysis title
-:[[File:Binding-regions-Non-merged-ChIP-Seq-tracks-summary-icon.png]] Non-merged ChIP-Seq tracks summary
+:[[File:Default-analysis-icon.png]] Non-merged ChIP-Seq tracks summary
 ;Provider
 :[[Institute of Systems Biology]]