https://wiki.biouml.org/index.php?action=history&feed=atom&title=Mutations_to_genes_with_weights_%28analysis%29 2026-04-13T11:30:55Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Mutations_to_genes_with_weights_(analysis)&diff=8881&oldid=prev 2020-12-09T11:15:03Z

<p>Protected &quot;<a href="/index.php/Mutations_to_genes_with_weights_(analysis)" title="Mutations to genes with weights (analysis)">Mutations to genes with weights (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 11:15, 9 December 2020</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Mutations_to_genes_with_weights_(analysis)&diff=8877&oldid=prev 2020-12-09T11:15:02Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Default-analysis-icon.png]] Mutations to genes with weights<br /> ;Provider<br /> :[[Biosoft]]<br /> ;Class<br /> :{{Class|biouml.plugins.genomeenhancer.analysis.MutationWeightGECalculator}}<br /> ;Plugin<br /> :[[Biouml.plugins.genomeenhancer (plugin)|biouml.plugins.genomeenhancer (Genome Enhancer)]]<br /> <br /> ==== Description ====<br /> Convert mutations to genes and calculates specific mutation weight (w) for each variation depending on it’s location in gene body and gene flanking regions (''5&lt;nowiki&gt;'&lt;/nowiki&gt; region size'' upstream and ''3&lt;nowiki&gt;'&lt;/nowiki&gt; region size'' downstream of the gene body).<br /> <br /> * w = 0.7 for variations in exon area<br /> * w = 1.3 for variations in promoter region (-1000bp upstream and 100bp downstream of TSS),<br /> * w = 1.0 for variations in other locations.<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Input track''' – Track with mutations<br /> * '''Species''' – Species to which analysis should be confined<br /> * '''5&lt;nowiki&gt;'&lt;/nowiki&gt; region size''' – Include 5&lt;nowiki&gt;'&lt;/nowiki&gt; region (promoter) of given size in bp<br /> * '''3&lt;nowiki&gt;'&lt;/nowiki&gt; region size''' – Include 3&lt;nowiki&gt;'&lt;/nowiki&gt; region of given size in bp<br /> * '''Promoter from''' – Promoter from<br /> * '''Promoter to''' – Promoter to<br /> * '''Types of resulting column''' – Types of resulting column in gene set<br /> * '''Output track''' – Track with mutations and weight column<br /> * '''Output table''' – Output table with genes mapped from mutations<br /> <br /> [[Category:Analyses]]<br /> [[Category:Genome enhancer (analyses group)]]<br /> [[Category:Biosoft analyses]]<br /> [[Category:Autogenerated pages]]</div>

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