https://wiki.biouml.org/index.php?action=history&feed=atom&title=Metabolic_Control_Analysis 2026-04-13T01:40:40Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Metabolic_Control_Analysis&diff=8776&oldid=prev 2020-12-09T11:14:50Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 11:14, 9 December 2020</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:<del class="diffchange diffchange-inline">DAE</del>-<del class="diffchange diffchange-inline">models</del>-Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:<ins class="diffchange diffchange-inline">Differential</ins>-<ins class="diffchange diffchange-inline">algebraic-equations</ins>-Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 11:</td> <td colspan="2" class="diff-lineno">Line 11:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>The metabolic control analysis quantifies how variables, such as fluxes and species concentrations, depend on the systems parameters. If the systems consists of ''r'' reactions and ''m'' species, then the matrices of control coefficients includes ''m''-by-''r'' elasticity matrix ''E'', ''m''-by-''r'' concentration control matrix ''C &lt;sup&gt;S&lt;/sup&gt;'' and ''r''-by-''r'' flux control matrix ''C &lt;sup&gt;J&lt;/sup&gt;'' calculating by the formulas</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>The metabolic control analysis quantifies how variables, such as fluxes and species concentrations, depend on the systems parameters. If the systems consists of ''r'' reactions and ''m'' species, then the matrices of control coefficients includes ''m''-by-''r'' elasticity matrix ''E'', ''m''-by-''r'' concentration control matrix ''C &lt;sup&gt;S&lt;/sup&gt;'' and ''r''-by-''r'' flux control matrix ''C &lt;sup&gt;J&lt;/sup&gt;'' calculating by the formulas</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:: [[File:<del class="diffchange diffchange-inline">DAE</del>-<del class="diffchange diffchange-inline">models</del>-Metabolic-Control-Analysis-mca.png]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:: [[File:<ins class="diffchange diffchange-inline">Differential</ins>-<ins class="diffchange diffchange-inline">algebraic-equations</ins>-Metabolic-Control-Analysis-mca.png]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here ''v'' is a vector of reaction rates, ''S'' is a vector of species concentrations, ''N = L × N&lt;sub&gt;R&lt;/sub&gt;'' is the stiochiometric matrix decomposition generated by the mass conservation analysis, and ''Id'' is ''r''-by-''r'' identity matrix&lt;sup&gt;1&lt;/sup&gt;. We also scaled all elements ''E&lt;sub&gt;i,j&lt;/sub&gt;'', ''C&lt;sup&gt;S&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' and ''C&lt;sup&gt;J&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' of these matrices with the coefficients ''S&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'', ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''S&lt;sub&gt;i&lt;/sub&gt;'' and ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'' respectively.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here ''v'' is a vector of reaction rates, ''S'' is a vector of species concentrations, ''N = L × N&lt;sub&gt;R&lt;/sub&gt;'' is the stiochiometric matrix decomposition generated by the mass conservation analysis, and ''Id'' is ''r''-by-''r'' identity matrix&lt;sup&gt;1&lt;/sup&gt;. We also scaled all elements ''E&lt;sub&gt;i,j&lt;/sub&gt;'', ''C&lt;sup&gt;S&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' and ''C&lt;sup&gt;J&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' of these matrices with the coefficients ''S&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'', ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''S&lt;sub&gt;i&lt;/sub&gt;'' and ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'' respectively.</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 19:</td> <td colspan="2" class="diff-lineno">Line 19:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category:<del class="diffchange diffchange-inline">DAE models </del>(analyses group)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category:<ins class="diffchange diffchange-inline">Differential algebraic equations </ins>(analyses group)]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:ISB analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:ISB analyses]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 12:00, 13 February 2017</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:<del class="diffchange diffchange-inline">Default</del>-<del class="diffchange diffchange-inline">analysis</del>-icon.png]] Metabolic Control Analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:<ins class="diffchange diffchange-inline">DAE</ins>-<ins class="diffchange diffchange-inline">models-Metabolic-Control-Analysis</ins>-icon.png]] Metabolic Control Analysis</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> </table>

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<p>Default analysis icon as separate file</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 11:07, 14 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:<del class="diffchange diffchange-inline">DAE</del>-<del class="diffchange diffchange-inline">models-Metabolic-Control-Analysis</del>-icon.png]] Metabolic Control Analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:<ins class="diffchange diffchange-inline">Default</ins>-<ins class="diffchange diffchange-inline">analysis</ins>-icon.png]] Metabolic Control Analysis</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> </table>

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<p>Class name added</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 04:14, 31 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">;Class</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:{{Class|biouml.plugins.modelreduction.MetabolicControlAnalysis}}</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Biouml.plugins.modelreduction (plugin)|biouml.plugins.modelreduction (Model reduction plug-in)]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Biouml.plugins.modelreduction (plugin)|biouml.plugins.modelreduction (Model reduction plug-in)]]</div></td></tr> </table>

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<p>Mistaken file names update reverted</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:40, 16 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:<ins class="diffchange diffchange-inline">DAE-models-</ins>Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:36, 16 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>The metabolic control analysis quantifies how variables, such as fluxes and species concentrations, depend on the systems parameters. If the systems consists of ''r'' reactions and ''m'' species, then the matrices of control coefficients includes ''m''-by-''r'' elasticity matrix ''E'', ''m''-by-''r'' concentration control matrix ''C &lt;sup&gt;S&lt;/sup&gt;'' and ''r''-by-''r'' flux control matrix ''C &lt;sup&gt;J&lt;/sup&gt;'' calculating by the formulas</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>The metabolic control analysis quantifies how variables, such as fluxes and species concentrations, depend on the systems parameters. If the systems consists of ''r'' reactions and ''m'' species, then the matrices of control coefficients includes ''m''-by-''r'' elasticity matrix ''E'', ''m''-by-''r'' concentration control matrix ''C &lt;sup&gt;S&lt;/sup&gt;'' and ''r''-by-''r'' flux control matrix ''C &lt;sup&gt;J&lt;/sup&gt;'' calculating by the formulas</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:: [[File:Metabolic-Control-Analysis-mca.png]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:: [[File:<ins class="diffchange diffchange-inline">DAE-models-</ins>Metabolic-Control-Analysis-mca.png]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here ''v'' is a vector of reaction rates, ''S'' is a vector of species concentrations, ''N = L × N&lt;sub&gt;R&lt;/sub&gt;'' is the stiochiometric matrix decomposition generated by the mass conservation analysis, and ''Id'' is ''r''-by-''r'' identity matrix&lt;sup&gt;1&lt;/sup&gt;. We also scaled all elements ''E&lt;sub&gt;i,j&lt;/sub&gt;'', ''C&lt;sup&gt;S&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' and ''C&lt;sup&gt;J&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' of these matrices with the coefficients ''S&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'', ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''S&lt;sub&gt;i&lt;/sub&gt;'' and ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'' respectively.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here ''v'' is a vector of reaction rates, ''S'' is a vector of species concentrations, ''N = L × N&lt;sub&gt;R&lt;/sub&gt;'' is the stiochiometric matrix decomposition generated by the mass conservation analysis, and ''Id'' is ''r''-by-''r'' identity matrix&lt;sup&gt;1&lt;/sup&gt;. We also scaled all elements ''E&lt;sub&gt;i,j&lt;/sub&gt;'', ''C&lt;sup&gt;S&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' and ''C&lt;sup&gt;J&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' of these matrices with the coefficients ''S&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'', ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''S&lt;sub&gt;i&lt;/sub&gt;'' and ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'' respectively.</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:32, 16 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:<del class="diffchange diffchange-inline">DAE-models-</del>Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>The metabolic control analysis quantifies how variables, such as fluxes and species concentrations, depend on the systems parameters. If the systems consists of ''r'' reactions and ''m'' species, then the matrices of control coefficients includes ''m''-by-''r'' elasticity matrix ''E'', ''m''-by-''r'' concentration control matrix ''C &lt;sup&gt;S&lt;/sup&gt;'' and ''r''-by-''r'' flux control matrix ''C &lt;sup&gt;J&lt;/sup&gt;'' calculating by the formulas</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>The metabolic control analysis quantifies how variables, such as fluxes and species concentrations, depend on the systems parameters. If the systems consists of ''r'' reactions and ''m'' species, then the matrices of control coefficients includes ''m''-by-''r'' elasticity matrix ''E'', ''m''-by-''r'' concentration control matrix ''C &lt;sup&gt;S&lt;/sup&gt;'' and ''r''-by-''r'' flux control matrix ''C &lt;sup&gt;J&lt;/sup&gt;'' calculating by the formulas</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:: [[File:<del class="diffchange diffchange-inline">DAE-models-</del>Metabolic-Control-Analysis-mca.png]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:: [[File:Metabolic-Control-Analysis-mca.png]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here ''v'' is a vector of reaction rates, ''S'' is a vector of species concentrations, ''N = L × N&lt;sub&gt;R&lt;/sub&gt;'' is the stiochiometric matrix decomposition generated by the mass conservation analysis, and ''Id'' is ''r''-by-''r'' identity matrix&lt;sup&gt;1&lt;/sup&gt;. We also scaled all elements ''E&lt;sub&gt;i,j&lt;/sub&gt;'', ''C&lt;sup&gt;S&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' and ''C&lt;sup&gt;J&lt;/sup&gt;&lt;sub&gt;i,j&lt;/sub&gt;'' of these matrices with the coefficients ''S&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'', ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''S&lt;sub&gt;i&lt;/sub&gt;'' and ''v&lt;sub&gt;j&lt;/sub&gt;'' / ''v&lt;sub&gt;i&lt;/sub&gt;'' respectively.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Here ''v'' is a vector of reaction rates, ''S'' is a vector of species concentrations, ''N = L × N&lt;sub&gt;R&lt;/sub&gt;'' is the stiochiometric matrix decomposition generated by the mass conservation analysis, and ''Id'' is ''r''-by-''r'' identity matrix&lt;sup&gt;1&lt;/sup&gt;. 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WikiBot https://wiki.biouml.org/index.php?title=Metabolic_Control_Analysis&diff=2479&oldid=prev 2013-05-07T03:51:04Z

<p>Link to plugin page</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 03:51, 7 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:biouml.plugins.modelreduction (Model reduction plug-in)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:<ins class="diffchange diffchange-inline">[[Biouml.plugins.modelreduction (plugin)|</ins>biouml.plugins.modelreduction (Model reduction plug-in)<ins class="diffchange diffchange-inline">]]</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Metabolic_Control_Analysis&diff=2161&oldid=prev 2013-05-06T04:47:02Z

<p>Plugin name added</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 04:47, 6 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">;Plugin</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:biouml.plugins.modelreduction (Model reduction plug-in)</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Metabolic_Control_Analysis&diff=1914&oldid=prev 2013-04-23T10:02:33Z

<p>Space after icon</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 10:02, 23 April 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:DAE-models-Metabolic-Control-Analysis-icon.png]]Metabolic Control Analysis</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:DAE-models-Metabolic-Control-Analysis-icon.png]] Metabolic Control Analysis</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> </table>

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