Merge binding regions for cell-lines (analysis) - Revision history

WikiBot: Automatic synchronization with BioUML

2015-08-25T05:20:00Z

Automatic synchronization with BioUML

WikiBot: Automatic synchronization with BioUML

2013-06-17T06:38:42Z

Automatic synchronization with BioUML

WikiBot: Default analysis icon as separate file

2013-06-14T11:07:25Z

Default analysis icon as separate file

WikiBot: Protected "Merge binding regions for cell-lines (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

2013-06-06T10:16:44Z

Protected "Merge binding regions for cell-lines (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

WikiBot: Automatic synchronization with BioUML

2013-06-06T10:16:42Z

Automatic synchronization with BioUML

New page

;Analysis title
:[[File:Binding-regions-Merge-binding-regions-for-cell-lines-icon.png]] Merge binding regions for cell-lines
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|ru.biosoft.bsa.analysis.bindingRegions.MergeCellLineBindingRegions}}
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]

==== Description ====
Create cell-specific tracks with merged binding regions (creation of tables: <nowiki>'</nowiki>bindingRegions_in_<nowiki>[</nowiki>CellLine*<nowiki>]'</nowiki>)

==== Parameters: ====

* '''Sequences collection''' – Select a source of nucleotide sequences
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
* '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks
* '''Species''' – Select a taxonomical species
* '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column)
* '''Chromosome gaps table''' – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis)
* '''Path to output folder''' – Output folder will be created under this location

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

@@ Line 20: / Line 20: @@
 * '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column)
 * '''Chromosome gaps table''' – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis)
-* '''Path to output folder''' – Output folder will be created under this location
+* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
 [[Category:Analyses]]

@@ Line 4: / Line 4: @@
 :[[Institute of Systems Biology]]
 ;Class
-:{{Class|ru.biosoft.bsa.analysis.bindingRegions.MergeCellLineBindingRegions}}
+:{{Class|biouml.plugins.bindingregions.analysis.MergeCellLineBindingRegions}}
 ;Plugin
-:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
+:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]
 ==== Description ====

@@ Line 1: / Line 1: @@
 ;Analysis title
-:[[File:Binding-regions-Merge-binding-regions-for-cell-lines-icon.png]] Merge binding regions for cell-lines
+:[[File:Default-analysis-icon.png]] Merge binding regions for cell-lines
 ;Provider
 :[[Institute of Systems Biology]]