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		<id>https://wiki.biouml.org/index.php?action=history&amp;feed=atom&amp;title=JVODE</id>
		<title>JVODE - Revision history</title>
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		<updated>2026-05-03T15:40:16Z</updated>
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	<entry>
		<id>https://wiki.biouml.org/index.php?title=JVODE&amp;diff=6870&amp;oldid=prev</id>
		<title>Axec@dote.ru at 14:47, 12 February 2017</title>
		<link rel="alternate" type="text/html" href="https://wiki.biouml.org/index.php?title=JVODE&amp;diff=6870&amp;oldid=prev"/>
				<updated>2017-02-12T14:47:28Z</updated>
		
		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class='diff diff-contentalign-left'&gt;
				&lt;col class='diff-marker' /&gt;
				&lt;col class='diff-content' /&gt;
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			&lt;tr style='vertical-align: top;'&gt;
			&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;← Older revision&lt;/td&gt;
			&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 14:47, 12 February 2017&lt;/td&gt;
			&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Java Variable-Coefficient ODE (JVODE) solver is a ported to java version of CVODE - part of&amp;#160; a software family [https://computation.llnl.gov/casc/sundials/main.html SUNDIALS]: SUite of Nonlinear and DIfferential/ALgebraic equation Solvers developed by Lawrence Livermore National Library. JVODE solves ordinary differential equations initial value problems with either stiff and non-stiff systems. It was refactored from CVODE into one ODE solver and user can specify which integration method will be used.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Java Variable-Coefficient ODE (JVODE) solver is a ported to java version of CVODE - part of&amp;#160; a software family [https://computation.llnl.gov/casc/sundials/main.html SUNDIALS]: SUite of Nonlinear and DIfferential/ALgebraic equation Solvers developed by Lawrence Livermore National Library. JVODE solves ordinary differential equations initial value problems with either stiff and non-stiff systems. It was refactored from CVODE into one ODE solver and user can specify which integration method will be used.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt; &lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;JVODE supports events which are given by function g(y,t) satisfying the following conditions:&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;*g(y,t) &amp;lt; 0 if event has not happened yet&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;*g(y,t) = 0 in exact point of event&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt;*g(y,t) &amp;gt; 0 after event happened.&lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del class=&quot;diffchange diffchange-inline&quot;&gt; &lt;/del&gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;User-provided solver parameters:&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;User-provided solver parameters:&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;*&amp;#160;  ''Absolute tolerance''. Absolute error, is used to adjust time step during simulation.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;*&amp;#160;  ''Relative tolerance''. Relative error, is used to adjust time step during simulation.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;*&amp;#160;  ''Statistics mode''. Indicates how much information will be presented to user during simulation.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;*&amp;#160;  ''Integration method''. Two linear multistep implicit methods are available:&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;*&amp;#160;  ''Integration method''. Two linear multistep implicit methods are available:&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160;  Adams - Moulton (recommended for non-stiff systems),&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160;  Adams - Moulton (recommended for non-stiff systems),&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 17:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 15:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Banded,&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Banded,&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Diagonal.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Diagonal.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;*&amp;#160;  ''Steps limit'' - maximum number of integration steps.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;*&amp;#160;  ''Minimum time step'' - minimal size of time step.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;*&amp;#160;  ''Maximum time step inverted'' - inversed maximal size of time step.&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;*&amp;#160;  ''Mu'', ''Ml''. Additional parameters for banded Jacobian approximation only. Note ''Mu'' and ''Ml'' must be such that: 0 &amp;lt; ''Mu'', ''Ml'' &amp;lt; N,&amp;#160; where N is system dimension.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;*&amp;#160;  ''Mu'', ''Ml''. Additional parameters for banded Jacobian approximation only. Note ''Mu'' and ''Ml'' must be such that: 0 &amp;lt; ''Mu'', ''Ml'' &amp;lt; N,&amp;#160; where N is system dimension.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; &amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; &amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Axec@dote.ru</name></author>	</entry>

	<entry>
		<id>https://wiki.biouml.org/index.php?title=JVODE&amp;diff=6768&amp;oldid=prev</id>
		<title>Manikitos@yandex.ru at 12:57, 10 November 2015</title>
		<link rel="alternate" type="text/html" href="https://wiki.biouml.org/index.php?title=JVODE&amp;diff=6768&amp;oldid=prev"/>
				<updated>2015-11-10T12:57:03Z</updated>
		
		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table class='diff diff-contentalign-left'&gt;
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			&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;← Older revision&lt;/td&gt;
			&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 12:57, 10 November 2015&lt;/td&gt;
			&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 17:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 17:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Banded,&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Banded,&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Diagonal.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;**&amp;#160; Diagonal.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;*&amp;#160;  Mu, Ml. Additional parameters for banded Jacobian approximation only. Note Mu and Ml must be such that: 0 &amp;lt; Mu,Ml &amp;lt; N,&amp;#160; where N is system dimension.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;*&amp;#160;  &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;Mu&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;, &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;Ml&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;. Additional parameters for banded Jacobian approximation only. Note &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;Mu&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;'' &lt;/ins&gt;and &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;Ml&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;'' &lt;/ins&gt;must be such that: 0 &amp;lt; &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;Mu&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;, &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;''&lt;/ins&gt;Ml&lt;ins class=&quot;diffchange diffchange-inline&quot;&gt;'' &lt;/ins&gt;&amp;lt; N,&amp;#160; where N is system dimension.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; &amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; &amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; &amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; &amp;#160;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Manikitos@yandex.ru</name></author>	</entry>

	<entry>
		<id>https://wiki.biouml.org/index.php?title=JVODE&amp;diff=6767&amp;oldid=prev</id>
		<title>Manikitos@yandex.ru: JVODE page created</title>
		<link rel="alternate" type="text/html" href="https://wiki.biouml.org/index.php?title=JVODE&amp;diff=6767&amp;oldid=prev"/>
				<updated>2015-11-10T12:55:46Z</updated>
		
		<summary type="html">&lt;p&gt;JVODE page created&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;Java Variable-Coefficient ODE (JVODE) solver is a ported to java version of CVODE - part of  a software family [https://computation.llnl.gov/casc/sundials/main.html SUNDIALS]: SUite of Nonlinear and DIfferential/ALgebraic equation Solvers developed by Lawrence Livermore National Library. JVODE solves ordinary differential equations initial value problems with either stiff and non-stiff systems. It was refactored from CVODE into one ODE solver and user can specify which integration method will be used.&lt;br /&gt;
 &lt;br /&gt;
JVODE supports events which are given by function g(y,t) satisfying the following conditions:&lt;br /&gt;
*g(y,t) &amp;lt; 0 if event has not happened yet&lt;br /&gt;
*g(y,t) = 0 in exact point of event&lt;br /&gt;
*g(y,t) &amp;gt; 0 after event happened.&lt;br /&gt;
 &lt;br /&gt;
User-provided solver parameters:&lt;br /&gt;
*   ''Integration method''. Two linear multistep implicit methods are available:&lt;br /&gt;
**   Adams - Moulton (recommended for non-stiff systems),&lt;br /&gt;
**   Backward Differential Formula (recommended for stiff systems).&lt;br /&gt;
*   ''Inner linear solver type''. Method for solving non-linear equation on each time step. Available methods are:&lt;br /&gt;
** Functional iterations.&lt;br /&gt;
** Newton iterations (Using linear equation system solving and Jacobian approximation).        &lt;br /&gt;
*   ''Jacobian approximation type''. In Newton iterations case user should also define type for Jacobian approximation (user-provided Jacobian is not supported yet):&lt;br /&gt;
**  Dense, (recommended)&lt;br /&gt;
**  Banded,&lt;br /&gt;
**  Diagonal.&lt;br /&gt;
*   Mu, Ml. Additional parameters for banded Jacobian approximation only. Note Mu and Ml must be such that: 0 &amp;lt; Mu,Ml &amp;lt; N,  where N is system dimension.&lt;br /&gt;
 &lt;br /&gt;
 &lt;br /&gt;
==References== &lt;br /&gt;
# P.N.Brown, G.D. Byrne, and A.C. Hundmarsh, VODE, a Variable-Coefficient ODE Solver, SIAM J. Sci. Stat. Comput., 10 (1989), pp. 1038-1051&lt;br /&gt;
# S. D. Cohen, A.C. Hindmarsh, CVODE, A Stiff/Nonstiff ODE Solver in C.&lt;/div&gt;</summary>
		<author><name>Manikitos@yandex.ru</name></author>	</entry>

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