Identical best site ROC-curves (analysis) - Revision history

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;Analysis title
:[[File:Default-analysis-icon.png]] Identical best site ROC-curves
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.bindingregions.fiveSiteModels.IdenticalBestSiteROCCurves}}
;Plugin
:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]

==== Description ====
Best sites: ROC-curves; union of best sites in single chip-seq track; massive applications to different tracks; summit(yes/no); filtration (yes/no); matrix derivation

==== Parameters: ====

* '''Sequences collection''' – Select a source of nucleotide sequences
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
* '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
* '''Is around summit''' – Is around summit
* '''Minimal region length''' – Minimal length of sequence region
* '''Matrix''' – Path to positional weight matrix
* '''Types of site models''' – Select site models for comparative analysis
* '''Path to output folder''' – Output folder will be created under this location

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

@@ Line 16: / Line 16: @@
 ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
-* '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
+* '''Input track''' – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
 * '''Is around summit''' – Is around summit
 * '''Minimal region length''' – Minimal length of sequence region
-* '''Matrix''' – Path to positional weight matrix
+* '''Matrix''' – Path to frequency matrix
 * '''Types of site models''' – Select site models for comparative analysis
 * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist