Genome Browser json - Revision history

Anna@developmentontheedge.com at 02:05, 4 February 2022

2022-02-04T02:05:34Z

Anna@developmentontheedge.com at 02:01, 4 February 2022

2022-02-04T02:01:28Z

Anna@developmentontheedge.com at 02:00, 4 February 2022

2022-02-04T02:00:54Z

Anna@developmentontheedge.com at 02:00, 4 February 2022

2022-02-04T02:00:25Z

Anna@developmentontheedge.com at 01:59, 4 February 2022

2022-02-04T01:59:40Z

Anna@developmentontheedge.com at 01:57, 4 February 2022

2022-02-04T01:57:35Z

Anna@developmentontheedge.com at 01:57, 4 February 2022

2022-02-04T01:57:20Z

Anna@developmentontheedge.com at 01:49, 4 February 2022

2022-02-04T01:49:24Z

Anna@developmentontheedge.com at 13:04, 3 February 2022

2022-02-03T13:04:39Z

Anna@developmentontheedge.com at 13:02, 3 February 2022

2022-02-03T13:02:19Z

@@ Line 3: / Line 3: @@
 All fields available for setup are described by comments below. Note, that to use this json obect as an example, all comments should be romoved.<br>
+{<br>
-&nbsp;&nbsp;<span style="color:blue">//Path to genome in BioUML server repository</span>
+&nbsp;&nbsp;<span style="color:#4a736f">//Path to genome in BioUML server repository</span><br>
-	"sequencePath":"databases/EnsemblHuman100/Sequences/chromosomes GRCh38",
+&nbsp;&nbsp;"sequencePath":"databases/EnsemblHuman100/Sequences/chromosomes GRCh38",<br>
-	//[optional] Track with chromosome to be displayed on top, set "" to hide this track
+&nbsp;&nbsp;<span style="color:#4a736f">//[optional] Track with chromosome to be displayed on top, set "" to hide this track</span><br>
-	"chromosomeTrack": "databases/EnsemblHuman100/Tracks/Karyotype",
+&nbsp;&nbsp;"chromosomeTrack": "databases/EnsemblHuman100/Tracks/Karyotype",<br>
-	//[optional] Chromosome to be opened first
+&nbsp;&nbsp;<span style="color:#4a736f">//[optional] Chromosome to be opened first</span><br>
-	"chromosome":"1",
+&nbsp;&nbsp;"chromosome":"1",<br>
-	//[optional] Start position
+&nbsp;&nbsp;<span style="color:#4a736f">//[optional] Start position</span><br>
-	"from":1234,
+&nbsp;&nbsp;"from":1234,<br>
-	//[optional] End position
+&nbsp;&nbsp;<span style="color:#4a736f">//[optional] End position</span><br>
-	"to": 5678,
+&nbsp;&nbsp;"to": 5678,<br>
-	// Tracks available for display,
+&nbsp;&nbsp;<span style="color:#4a736f">// Tracks available for display,</span><br>
-	// Each track is set as "Label":"Path to track in BioUML server repository"
+&nbsp;&nbsp;<span style="color:#4a736f">// Each track is set as "Label":"Path to track in BioUML server repository"</span><br>
-	// BigBed tracks can be shown by http/https links
+&nbsp;&nbsp;<span style="color:#4a736f">// BigBed tracks can be shown by http/https links</span><br>
-	"tracks":{
+&nbsp;&nbsp;"tracks":{<br>
-		"GC content":"databases/EnsemblHuman100/Tracks/GC content",
+&nbsp;&nbsp;&nbsp;&nbsp;"GC content":"databases/EnsemblHuman100/Tracks/GC content",<br>
-		"Genes":"databases/EnsemblHuman100/Tracks/Genes",
+&nbsp;&nbsp;&nbsp;&nbsp;"Genes":"databases/EnsemblHuman100/Tracks/Genes",<br>
-		"Extended genes":"databases/EnsemblHuman100/Tracks/ExtendedGeneTrack",
+&nbsp;&nbsp;&nbsp;&nbsp;"Extended genes":"databases/EnsemblHuman100/Tracks/ExtendedGeneTrack",<br>
-		"Transcripts":"databases/EnsemblHuman100/Tracks/Transcripts"
+&nbsp;&nbsp;&nbsp;&nbsp;"Transcripts":"databases/EnsemblHuman100/Tracks/Transcripts"<br>
-	},
+&nbsp;&nbsp;},<br>
-	//Some specific track properties, set {} if no specific properties required
+&nbsp;&nbsp;<span style="color:#4a736f">//Some specific track properties, set {} if no specific properties required</span><br>
-	"trackProperties":{
+&nbsp;&nbsp;"trackProperties":{<br>
-		"BBTrack_1":{"chr_name_mapping":"hg38_ucsc_to_ensembl"}
+&nbsp;&nbsp;&nbsp;&nbsp;"BBTrack_1":{"chr_name_mapping":"hg38_ucsc_to_ensembl"}<br>
-	},
+&nbsp;&nbsp;},<br>
-	//[optional] Tracks visible when browser is opened, by labels in 'tracks' field
+&nbsp;&nbsp;<span style="color:#4a736f">//[optional] Tracks visible when browser is opened, by labels in 'tracks' field</span><br>
-	//if not set, first two tracks will be shown
+&nbsp;&nbsp;<span style="color:#4a736f">//if not set, first two tracks will be shown</span><br>
-	"initialTracks": ["Genes", "Transcripts"]
+&nbsp;&nbsp;"initialTracks": ["Genes", "Transcripts"]<br>
+}

@@ Line 4: / Line 4: @@
+{
-	<span style="color:blue">//Path to genome in BioUML server repository</span>
+&nbsp;&nbsp;<span style="color:blue">//Path to genome in BioUML server repository</span>
 	"sequencePath":"databases/EnsemblHuman100/Sequences/chromosomes GRCh38",
 	//[optional] Track with chromosome to be displayed on top, set "" to hide this track

@@ Line 2: / Line 2: @@
 <br>
 All fields available for setup are described by comments below. Note, that to use this json obect as an example, all comments should be romoved.<br>
-−
+{
-	//Path to genome in BioUML server repository
+	<span style="color:blue">//Path to genome in BioUML server repository</span>
 	"sequencePath":"databases/EnsemblHuman100/Sequences/chromosomes GRCh38",
 	//[optional] Track with chromosome to be displayed on top, set "" to hide this track

@@ Line 2: / Line 2: @@
 <br>
 All fields available for setup are described by comments below. Note, that to use this json obect as an example, all comments should be romoved.<br>
-```javascript
+{
 	//Path to genome in BioUML server repository
@@ Line 31: / Line 31: @@
 	"initialTracks": ["Genes", "Transcripts"]
+}
-```

@@ Line 2: / Line 2: @@
 <br>
 All fields available for setup are described by comments below. Note, that to use this json obect as an example, all comments should be romoved.<br>
-<pre>
+```javascript
+{
 	//Path to genome in BioUML server repository
@@ Line 31: / Line 31: @@
 	"initialTracks": ["Genes", "Transcripts"]
+}
-</pre>
+```

@@ Line 1: / Line 1: @@
-The BioUML [[Genome Browser iframe]] and be adjusted with settings in json format.
+The BioUML [[Genome Browser iframe]] can be adjusted with settings in json format.
 <br>
 All fields available for setup are described by comments below. Note, that to use this json obect as an example, all comments should be romoved.<br>