Genome Browser iframe - Revision history

Anna@developmentontheedge.com at 01:55, 4 February 2022

2022-02-04T01:55:10Z

Anna@developmentontheedge.com: Anna@developmentontheedge.com moved page Genome browser iframe to Genome Browser iframe

2022-02-03T13:04:23Z

Anna@developmentontheedge.com moved page Genome browser iframe to Genome Browser iframe

Anna@developmentontheedge.com at 08:53, 3 February 2022

2022-02-03T08:53:21Z

Anna@developmentontheedge.com at 08:52, 3 February 2022

2022-02-03T08:52:34Z

Anna@developmentontheedge.com at 08:49, 3 February 2022

2022-02-03T08:49:28Z

Anna@developmentontheedge.com at 08:47, 3 February 2022

2022-02-03T08:47:55Z

Anna@developmentontheedge.com: Created page with "BioUML Genome Browser can be used as separate component. Genome Browser is developed as separate git project http://gitlab.dote.ru/isb/genome-browser-biouml It should be inst..."

2022-02-03T08:47:16Z

Created page with "BioUML Genome Browser can be used as separate component. Genome Browser is developed as separate git project http://gitlab.dote.ru/isb/genome-browser-biouml It should be inst..."

New page

BioUML Genome Browser can be used as separate component.
Genome Browser is developed as separate git project http://gitlab.dote.ru/isb/genome-browser-biouml
It should be installed as addition to BioUML server, since it uses server's javascripts, styles, images.

Here is the example of Genome Browser: https://ict.biouml.org/genomebrowser/ It uses BioUML server https://ict.biouml.org/bioumlweb

The Genome Browser can be embed as iframe to any page as following:
<iframe src="https://ict.biouml.org/genomebrowser/" title="BioUML Genome Browser" style="width:100%; height:100%;"></iframe>

The genome build, list of available tracks, start positions in genome can be configured for each installation of the Genome Browser in several ways:

1. Json file passed as url parameter "setup=..." to iframe or to a single page. The json config file is described [[Genome Browser json]]. It should be placed in the same domain, as Genome Browser page. To use files from another domain, Access-Control-Allow-Origin header should be send.
https://ict.biouml.org/genomebrowser/?setup=ens85.json

2. Settings can be passes as url parameter "json=". Javascript object with settings should be converted to url string, for example, via encodeURIComponent(JSON.stringify(json_object)) methods.
https://ict.biouml.org/genomebrowser/?json=%7B%22sequencePath%22%3A%22databases%2FEnsemblMouse81_38%2FSequences%2Fchromosomes%20GRCm38%22%2C%22chromosome%22%3A%2210%22%2C%22from%22%3A1945654%2C%22to%22%3A4294028%2C%22chromosomeTrack%22%3A%22%22%2C%22tracks%22%3A%7B%22Genes%22%3A%22databases%2FEnsemblMouse81_38%2FTracks%2FGenes%22%2C%22Karyotype%22%3A%22databases%2FEnsemblMouse81_38%2FTracks%2FKaryotype%22%7D%2C%22initialTracks%22%3A%5B%22Genes%22%2C%22Karyotype%22%5D%7D

← Older revision		Revision as of 01:55, 4 February 2022
Line 5:		Line 5:

	Here is the example of Genome Browser: https://ict.biouml.org/genomebrowser/ It uses BioUML server https://ict.biouml.org/bioumlweb		Here is the example of Genome Browser: https://ict.biouml.org/genomebrowser/ It uses BioUML server https://ict.biouml.org/bioumlweb
		+
		+	[[File:GB_browser.png]]

	The Genome Browser can be embed as iframe to any page as following:<br>		The Genome Browser can be embed as iframe to any page as following:<br>

@@ Line 6: / Line 6: @@
 Here is the example of Genome Browser: https://ict.biouml.org/genomebrowser/ It uses BioUML server https://ict.biouml.org/bioumlweb
-The Genome Browser can be embed as iframe to any page as following:
+The Genome Browser can be embed as iframe to any page as following:<br>
 <iframe src="... page with Genome Browser..." title="BioUML Genome Browser" style="width:100%; height:100%;"></iframe>
-The genome build, list of available tracks, start positions in genome and some other features can be configured for each installation of the Genome Browser in several ways:
+The genome build, list of available tracks, start positions in genome and some other features can be configured for each installation of the Genome Browser in several ways:<br>
-. Json file passed as url parameter "setup=..." to iframe or to a single page. The json config file is described [[Genome Browser json]]. It should be placed in the same domain, as Genome Browser page. To use files from another domain, Access-Control-Allow-Origin header should be send.
+. Json file passed as url parameter "setup=..." to iframe or to a single page. The json config file is described [[Genome Browser json]]. It should be placed in the same domain, as Genome Browser page. To use files from another domain, Access-Control-Allow-Origin header should be send.<br>
 Example: https://ict.biouml.org/genomebrowser/?setup=ens85.json
+<br><br>
-. Settings can be passes as url parameter "json=". Javascript object with settings should be converted to url string, for example, via encodeURIComponent(JSON.stringify(json_object)) methods.
+. Settings can be passes as url parameter "json=". Javascript object with settings should be converted to url string, for example, via encodeURIComponent(JSON.stringify(json_object)) methods.<br>
 Example: https://ict.biouml.org/genomebrowser/?json=%7B%22sequencePath%22%3A%22databases%2FEnsemblMouse81_38%2FSequences%2Fchromosomes%20GRCm38%22%2C%22chromosome%22%3A%2210%22%2C%22from%22%3A1945654%2C%22to%22%3A4294028%2C%22chromosomeTrack%22%3A%22%22%2C%22tracks%22%3A%7B%22Genes%22%3A%22databases%2FEnsemblMouse81_38%2FTracks%2FGenes%22%2C%22Karyotype%22%3A%22databases%2FEnsemblMouse81_38%2FTracks%2FKaryotype%22%7D%2C%22initialTracks%22%3A%5B%22Genes%22%2C%22Karyotype%22%5D%7D

@@ Line 1: / Line 1: @@
-BioUML Genome Browser can be used as separate component.
+'''BioUML Genome Browser''' can be used as separate component.
 Genome Browser is developed as separate git project http://gitlab.dote.ru/isb/genome-browser-biouml
 It should be installed as addition to BioUML server, since it uses server's javascripts, styles, images.