https://wiki.biouml.org/index.php?action=history&feed=atom&title=Gene_set_enrichment_analysis_HumanPSD_%28Gene_table%29_%28workflow%29 2026-04-21T15:19:46Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Gene_set_enrichment_analysis_HumanPSD_(Gene_table)_(workflow)&diff=7885&oldid=prev 2019-03-12T09:34:56Z

<p>Protected &quot;<a href="/index.php/Gene_set_enrichment_analysis_HumanPSD_(Gene_table)_(workflow)" title="Gene set enrichment analysis HumanPSD (Gene table) (workflow)">Gene set enrichment analysis HumanPSD (Gene table) (workflow)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 09:34, 12 March 2019</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Gene_set_enrichment_analysis_HumanPSD_(Gene_table)_(workflow)&diff=7881&oldid=prev 2019-03-12T09:34:55Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Workflow title<br /> :Gene set enrichment analysis HumanPSD (Gene table)<br /> ;Provider<br /> :[[geneXplain GmbH]]<br /> == Workflow overview ==<br /> [[File:Gene-set-enrichment-analysis-HumanPSD-Gene-table-workflow-overview.png|400px]]<br /> == Description ==<br /> This workflow is designed to perform Gene Set Enrichment Analysis, GSEA, as it is described at [http://www.broadinstitute.org/gsea/index.jsp http://www.broadinstitute.org/gsea/index.jsp]. As input, any gene or protein table that includes fold change (or any other numerical value that can be used as a weighted column) can be taken.<br /> <br />  At the first step, the input table is converted into a table with Ensembl Gene IDs.<br /> <br /> This table with Ensembl Gene IDs is subjected to GSEA. Enrichment analysis is done in parallel by the following ontologies: GO biological processes, GO cellular components, GO molecular functions and by the Reactome pathways.<br /> <br /> For each ontological term several parameters are calculated, including nominal p-value, ES, NES, as well as hit names, the link to the corresponding ontological term, and the link to open a visualization plot.<br /> <br /> == Parameters ==<br /> ;Input table<br /> ;Enrichment Weight Column<br /> :Enter the name of the column from the Input table with numerical values<br /> ;Species<br /> ;Results folder<br /> <br /> [[Category:Workflows]]<br /> [[Category:GeneXplain workflows]]<br /> [[Category:Autogenerated pages]]</div>

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