Functional classification by diagrams (analysis) - Revision history

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2017-02-13T12:00:52Z

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WikiBot: Automatic synchronization with BioUML

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;Analysis title
:[[File:Data-Functional-classification-by-diagrams-icon.png]] Functional classification by diagrams
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.enrichment.DiagramClassification}}
;Plugin
:[[Biouml.plugins.enrichment (plugin)|biouml.plugins.enrichment (Enrichment analysis plugin)]]

==== Description ====
Functional classification by diagrams

==== Parameters: ====

* '''Source data set''' – Input table having Ensembl genes as rows.
* '''Type''' – Type
* '''Path to classification root''' – Specify path to the folder containing classification tables, when <nowiki>'</nowiki>Repository folder<nowiki>'</nowiki> is selected as classification. Only tables with <nowiki>'</nowiki>Ensembl gene<nowiki>'</nowiki> type are used for the classification.
* '''Reference collection''' – If specified, this collection will be used as list of all Ensembl genes for custom classification. If not specified, list of all Ensembl genes will be created by combining all categories.
* '''Minimal hits to group''' – Groups with lower number of hits will be filtered out (n<sub>min</sub>)
* '''Only over-represented''' (expert) – If checked, under-represented groups will be excluded from the result
* '''P-value threshold''' – P-value threshold (P<sub>max</sub>)
* '''Result name''' – Name and path for the resulting table

[[Category:Analyses]]
[[Category:Data (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

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 ;Analysis title
-:[[File:Data-Functional-classification-by-diagrams-icon.png]] Functional classification by diagrams
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 ;Provider
 :[[Institute of Systems Biology]]
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 ==== Description ====
-Functional classification by diagrams
+Functional classification by diagrams.
 ==== Parameters: ====
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 [[Category:Analyses]]
-[[Category:Data (analyses group)]]
+[[Category:Gene set analysis (analyses group)]]
 [[Category:ISB analyses]]
 [[Category:Autogenerated pages]]