https://wiki.biouml.org/index.php?action=history&feed=atom&title=Find_shortest_path_between_two_sets_%28analysis%29 2026-04-13T03:19:03Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Find_shortest_path_between_two_sets_(analysis)&diff=7806&oldid=prev 2019-03-12T09:33:58Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 09:33, 12 March 2019</td> </tr><tr><td colspan="2" class="diff-lineno">Line 20:</td> <td colspan="2" class="diff-lineno">Line 20:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max radius''' – Maximal search radius</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max radius''' – Maximal search radius</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Search collection''' – Collection containing reactions</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Search collection''' – Collection containing reactions</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* '''Custom search collection''' – Path to the custom search collection</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Species''' – Species to which analysis should be confined</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Species''' – Species to which analysis should be confined</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Output collection''' – Path to table with results</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Output collection''' – Path to table with results</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Find_shortest_path_between_two_sets_(analysis)&diff=7057&oldid=prev 2017-02-13T12:01:27Z

<p>Protected &quot;<a href="/index.php/Find_shortest_path_between_two_sets_(analysis)" title="Find shortest path between two sets (analysis)">Find shortest path between two sets (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 12:01, 13 February 2017</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Find_shortest_path_between_two_sets_(analysis)&diff=7050&oldid=prev 2017-02-13T12:01:25Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Molecular-networks-Find-shortest-path-between-two-sets-icon.png]] Find shortest path between two sets<br /> ;Provider<br /> :[[geneXplain GmbH]]<br /> ;Class<br /> :{{Class|biouml.plugins.keynodes.ShortestPathsBetweenSetsFinder}}<br /> ;Plugin<br /> :[[Biouml.plugins.keynodes (plugin)|biouml.plugins.keynodes (Master regulator node analysis plugin)]]<br /> <br /> ==== Description ====<br /> Analysis finds the shortest paths (in the specified direction: upstream, downstream of both) from molecules of the '''Start set''' to the molecules of the '''End set'''. Length of such paths is limited by the selected '''maximal search radius'''.<br /> <br /> It outputs the table where each row corresponds to the molecule from the '''Start set'''. And for each row of this table column &lt;nowiki&gt;'&lt;/nowiki&gt;''Hit names''&lt;nowiki&gt;'&lt;/nowiki&gt; it contains all molecules from the '''End set''' for which was found the path from the appropriate molecule from the '''Start set'''.<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Start set''' – Set with elements to start path with<br /> * '''End set''' – Set with elements to end path with<br /> * '''Search direction''' – Direction to perform search in (either upstream, downstream reactions or both directions)<br /> * '''Max radius''' – Maximal search radius<br /> * '''Search collection''' – Collection containing reactions<br /> * '''Species''' – Species to which analysis should be confined<br /> * '''Output collection''' – Path to table with results<br /> <br /> [[Category:Analyses]]<br /> [[Category:Molecular networks (analyses group)]]<br /> [[Category:GeneXplain analyses]]<br /> [[Category:Autogenerated pages]]</div>

WikiBot