https://wiki.biouml.org/index.php?action=history&feed=atom&title=Fastx_clip 2026-05-03T16:48:36Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Fastx_clip&diff=8378&oldid=prev 2019-03-25T12:05:46Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 12:05, 25 March 2019</td> </tr><tr><td colspan="2" class="diff-lineno">Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Clipping Illustration==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Clipping Illustration==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">==Clipping Example==</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_example.png</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">In the above example:</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* Sequence no. 1 was discarded since it wasn't clipped (i.e. didn't contain the adapter sequence). (Output parameter).</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* Sequence no. 5 was discarded --- it's length (after clipping) was shorter than 15 nt (Minimum Sequence Length parameter).</ins></div></td></tr> </table>

Sspintus@dote.ru https://wiki.biouml.org/index.php?title=Fastx_clip&diff=8377&oldid=prev 2019-03-25T12:04:11Z

<p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 12:04, 25 March 2019</td> </tr><tr><td colspan="2" class="diff-lineno">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Clipping Illustration==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==Clipping Illustration==</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">[[File:</del>https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png<del class="diffchange diffchange-inline">]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png</div></td></tr> </table>

Sspintus@dote.ru https://wiki.biouml.org/index.php?title=Fastx_clip&diff=8376&oldid=prev 2019-03-25T11:20:52Z

<p>Created page with &quot;==What it does== This tool clips adapters from the 3&#039;-end of the sequences in a FASTA/FASTQ file. ==Clipping Illustration== [[File:https://toolshed.g2.bx.psu.edu/repository/...&quot;</p> <p><b>New page</b></p><div>==What it does==<br /> <br /> This tool clips adapters from the 3'-end of the sequences in a FASTA/FASTQ file.<br /> <br /> ==Clipping Illustration==<br /> [[File:https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_illustration.png]]</div>

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