https://wiki.biouml.org/index.php?action=history&feed=atom&title=Create_tissue-specific_promoter_track_%28analysis%29 2026-04-13T07:59:41Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Create_tissue-specific_promoter_track_(analysis)&diff=8749&oldid=prev 2020-12-09T11:14:46Z

<p>Protected &quot;<a href="/index.php/Create_tissue-specific_promoter_track_(analysis)" title="Create tissue-specific promoter track (analysis)">Create tissue-specific promoter track (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 11:14, 9 December 2020</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Create_tissue-specific_promoter_track_(analysis)&diff=8745&oldid=prev 2020-12-09T11:14:46Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Data-Create-tissue-specific-promoter-track-icon.png]] Create tissue-specific promoter track<br /> ;Provider<br /> :[[geneXplain GmbH]]<br /> ;Class<br /> :{{Class|com.genexplain.genome.FantomTSS}}<br /> ;Plugin<br /> :[[Com.genexplain.genome (plugin)|com.genexplain.genome (geneXplain genome)]]<br /> <br /> === Create a cell/tissue-specific promoter track ===<br /> <br /> ==== Parameters ====<br /> <br /> * '''Input genes''' - Genes to extract TSSs for<br /> * '''Fantom database''' - Fantom database path<br /> * '''Cell/Tissue condition''' - Cell/Tissue condition<br /> * '''Start of promoter range''' - Start of promoter range relative to TSS<br /> * '''End of promoter range''' - End of promoter range relative to TSS<br /> * '''TSS selection''' - Selection of TSS if multiple TSSs are known<br /> * '''Substitute default''' - Substitute gene promoter by default if missing in selected condition<br /> * '''Output path''' - Output path for Fantom5 promoters<br /> <br /> ==== Output ====<br /> <br /> The output is a track of genomic regions corresponding to promoters extracted according to specified parameters.<br /> <br /> ==== Description ====<br /> This tool takes a set of Ensembl genes as input and extracts promoter regions using TSS locations defined on the basis of CAGE data in Fantom5.<br /> [[Category:Analyses]]<br /> [[Category:Data (analyses group)]]<br /> [[Category:GeneXplain analyses]]<br /> [[Category:Autogenerated pages]]</div>

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