https://wiki.biouml.org/index.php?action=history&feed=atom&title=Create_matrix_by_mixture_of_normal_components_%28analysis%29 2026-04-12T22:20:59Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Create_matrix_by_mixture_of_normal_components_(analysis)&diff=6942&oldid=prev 2017-02-13T12:00:05Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 12:00, 13 February 2017</td> </tr><tr><td colspan="2" class="diff-lineno">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal region length''' – Minimal length of sequence region</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal region length''' – Minimal length of sequence region</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value threshold''' – P-value threshold</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value threshold''' – P-value threshold</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''<del class="diffchange diffchange-inline">Max </del>iterations''' – Maximal number of iterations <del class="diffchange diffchange-inline">for </del>algorithm</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''<ins class="diffchange diffchange-inline">Maximal number of </ins>iterations''' – Maximal number of iterations <ins class="diffchange diffchange-inline">in </ins>algorithm</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Number of matrices''' – How many matrices will be constructed</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Number of matrices''' – How many matrices will be constructed</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''Consensus''' – Specify the consensus <del class="diffchange diffchange-inline">of initial matrix</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''Consensus''' – Specify the consensus</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Matrix path''' – Specify the path to the initial matrix</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Matrix path''' – Specify the path to the initial matrix</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists)</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''Matrix name prefix''' – All matrices will be created with given prefix</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''Matrix name prefix''' – All matrices will be created with given <ins class="diffchange diffchange-inline">name </ins>prefix</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:19, 25 August 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;2.1.1.1.4&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;2.1.1.1.4&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal region length''' – Minimal length of sequence region</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal region length''' – Minimal length of sequence region</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''P-value <ins class="diffchange diffchange-inline">threshold</ins>''' – P-value <ins class="diffchange diffchange-inline">threshold</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max iterations''' – Maximal number of iterations for algorithm</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max iterations''' – Maximal number of iterations for algorithm</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Number of matrices''' – How many matrices will be constructed</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Number of matrices''' – How many matrices will be constructed</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 09:17, 11 December 2014</td> </tr><tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Parameters: ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Parameters: ====</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''Input track''' – Select input <del class="diffchange diffchange-inline">ChIP-seq </del>track (<del class="diffchange diffchange-inline">must </del>be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''Input track''' – Select input track (<ins class="diffchange diffchange-inline">it has to contain the merged binding regions; it can </ins>be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;2.1.1.1.4&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;2.1.1.1.4&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal region length''' – Minimal length of sequence region</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal region length''' – Minimal length of sequence region</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''Max iterations''' – <del class="diffchange diffchange-inline">Number </del>of iterations for algorithm</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''Max iterations''' – <ins class="diffchange diffchange-inline">Maximal number </ins>of iterations for algorithm</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Number of matrices''' – How many matrices will be constructed</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Number of matrices''' – How many matrices will be constructed</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 06:38, 17 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Class</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Class</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:{{Class|<del class="diffchange diffchange-inline">ru</del>.<del class="diffchange diffchange-inline">biosoft</del>.<del class="diffchange diffchange-inline">bsa</del>.analysis<del class="diffchange diffchange-inline">.bindingRegions</del>.CreateMatrixByMixture}}</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:{{Class|<ins class="diffchange diffchange-inline">biouml</ins>.<ins class="diffchange diffchange-inline">plugins</ins>.<ins class="diffchange diffchange-inline">bindingregions</ins>.analysis.CreateMatrixByMixture}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[<del class="diffchange diffchange-inline">Ru</del>.<del class="diffchange diffchange-inline">biosoft</del>.<del class="diffchange diffchange-inline">bsa </del>(plugin)|<del class="diffchange diffchange-inline">ru</del>.<del class="diffchange diffchange-inline">biosoft</del>.<del class="diffchange diffchange-inline">bsa </del>(<del class="diffchange diffchange-inline">Bio</del>-<del class="diffchange diffchange-inline">sequences </del>analyses <del class="diffchange diffchange-inline">plugin</del>)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[<ins class="diffchange diffchange-inline">Biouml</ins>.<ins class="diffchange diffchange-inline">plugins</ins>.<ins class="diffchange diffchange-inline">bindingregions </ins>(plugin)|<ins class="diffchange diffchange-inline">biouml</ins>.<ins class="diffchange diffchange-inline">plugins</ins>.<ins class="diffchange diffchange-inline">bindingregions </ins>(<ins class="diffchange diffchange-inline">Binding</ins>-<ins class="diffchange diffchange-inline">regions related </ins>analyses)]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr> </table>

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<p>Default analysis icon as separate file</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 11:07, 14 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:<del class="diffchange diffchange-inline">Binding</del>-<del class="diffchange diffchange-inline">regions-Create-matrix-by-mixture-of-normal-components</del>-icon.png]] Create matrix by mixture of normal components</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:<ins class="diffchange diffchange-inline">Default</ins>-<ins class="diffchange diffchange-inline">analysis</ins>-icon.png]] Create matrix by mixture of normal components</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 10:41, 14 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Input track''' – Select input ChIP-seq track (must be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Input track''' – Select input ChIP-seq track (must be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;2.1.1.1.4&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;2.1.1.1.4&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* '''Minimal region length''' – Minimal length of sequence region</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max iterations''' – Number of iterations for algorithm</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max iterations''' – Number of iterations for algorithm</div></td></tr> </table>

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<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 08:31, 10 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 14:</td> <td colspan="2" class="diff-lineno">Line 14:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Input track''' – Select input ChIP-seq track (must be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Input track''' – Select input ChIP-seq track (must be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;1.1<del class="diffchange diffchange-inline">.2</del>.1&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;<ins class="diffchange diffchange-inline">2.</ins>1.1.1<ins class="diffchange diffchange-inline">.4</ins>&lt;nowiki&gt;'&lt;/nowiki&gt;)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''P-value''' – P-value</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max iterations''' – Number of iterations for algorithm</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Max iterations''' – Number of iterations for algorithm</div></td></tr> </table>

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<p>Protected &quot;<a href="/index.php/Create_matrix_by_mixture_of_normal_components_(analysis)" title="Create matrix by mixture of normal components (analysis)">Create matrix by mixture of normal components (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 10:39, 7 June 2013</td> </tr></table>

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<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Binding-regions-Create-matrix-by-mixture-of-normal-components-icon.png]] Create matrix by mixture of normal components<br /> ;Provider<br /> :[[Institute of Systems Biology]]<br /> ;Class<br /> :{{Class|ru.biosoft.bsa.analysis.bindingRegions.CreateMatrixByMixture}}<br /> ;Plugin<br /> :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]<br /> <br /> ==== Description ====<br /> Calculation of matrix by using mixture of normal components for maximal IPS scores<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Input track''' – Select input ChIP-seq track (must be the result of &lt;nowiki&gt;'&lt;/nowiki&gt;Merge binding regions for cell-lines&lt;nowiki&gt;'&lt;/nowiki&gt; analysis)<br /> * '''TF class''' – TF class in Wingender classification (like &lt;nowiki&gt;'&lt;/nowiki&gt;1.1.2.1&lt;nowiki&gt;'&lt;/nowiki&gt;)<br /> * '''P-value''' – P-value<br /> * '''Max iterations''' – Number of iterations for algorithm<br /> * '''Number of matrices''' – How many matrices will be constructed<br /> * '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus<br /> * '''Consensus''' – Specify the consensus of initial matrix<br /> * '''Matrix path''' – Specify the path to the initial matrix<br /> * '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists)<br /> * '''Matrix name prefix''' – All matrices will be created with given prefix<br /> <br /> [[Category:Analyses]]<br /> [[Category:Binding regions (analyses group)]]<br /> [[Category:ISB analyses]]<br /> [[Category:Autogenerated pages]]</div>

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