WikiBot: Protected "Convert table to VCF track (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

2020-12-09T11:15:19Z

Protected "Convert table to VCF track (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

WikiBot: Automatic synchronization with BioUML

2020-12-09T11:15:18Z

Automatic synchronization with BioUML

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;Analysis title
:[[File:Operations-with-genomic-tracks-Convert-table-to-VCF-track-icon.png]] Convert table to VCF track
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|ru.biosoft.bsa.analysis.TableToVCFTrack}}
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]

==== Description ====
This analysis converts a table to a VCF track.

==== Parameters: ====

* '''Input table''' – Table to convert to the track
* '''Chromosome (sequence) column''' – Column where chromosome number is located (either like <nowiki>'</nowiki>chr1<nowiki>'</nowiki>, <nowiki>'</nowiki>chr:1<nowiki>'</nowiki>, <nowiki>'</nowiki>chr.1<nowiki>'</nowiki> or simply <nowiki>'</nowiki>1<nowiki>'</nowiki>)
* '''From column''' – Column where site start coordinate is located
* '''To column''' – Column where site end coordinate is located
* '''AltAllele column''' – Alterative allele column
* '''RefAllele column''' – Reference allele column
* '''Strand column''' – Column where site strand is located (+ or -)
* '''Sequence collection''' – Sequences to bind the track to
* '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
* '''Output track''' – Path where to store the result

[[Category:Analyses]]
[[Category:Operations with genomic tracks (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]

Convert table to VCF track (analysis) - Revision history

WikiBot: Protected "Convert table to VCF track (analysis)": Autogenerated page (‎[edit=sysop] (indefinite))

WikiBot: Automatic synchronization with BioUML