https://wiki.biouml.org/index.php?action=history&feed=atom&title=Compute_coverage_by_window_%28analysis%29 2026-04-13T03:08:26Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Compute_coverage_by_window_(analysis)&diff=8961&oldid=prev 2020-12-09T11:15:18Z

<p>Protected &quot;<a href="/index.php/Compute_coverage_by_window_(analysis)" title="Compute coverage by window (analysis)">Compute coverage by window (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 11:15, 9 December 2020</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Compute_coverage_by_window_(analysis)&diff=8957&oldid=prev 2020-12-09T11:15:18Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Default-analysis-icon.png]] Compute coverage by window<br /> ;Provider<br /> :[[Institute of Systems Biology]]<br /> ;Class<br /> :{{Class|ru.biosoft.bsa.analysis.TrackCoverageAnalysis}}<br /> ;Plugin<br /> :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]<br /> <br /> ==== Description ====<br /> Calculates the coverage of given track in fixed windows.<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Input track''' – Track to calculate coverage for<br /> * '''Sequences''' – Collection of sequences<br /> ** '''Sequences source''' – Select database to get sequences from or &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; to specify sequences location manually<br /> ** '''Sequence collection''' – Specify path to folder containing sequences if &lt;nowiki&gt;'&lt;/nowiki&gt;Custom&lt;nowiki&gt;'&lt;/nowiki&gt; sequences source is selected<br /> * '''Window size''' – Size of the window to average the coverage<br /> * '''Step''' – Number of bp to step (at least 1000)<br /> * '''Output empty intervals''' – When checked, intervals without single site will appear in the output table as well<br /> * '''Output table''' – Path to the output table<br /> <br /> [[Category:Analyses]]<br /> [[Category:Operations with genomic tracks (analyses group)]]<br /> [[Category:ISB analyses]]<br /> [[Category:Autogenerated pages]]</div>

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