https://wiki.biouml.org/index.php?action=history&feed=atom&title=Cistrom_construction_%28analysis%29 2026-04-13T06:32:00Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Cistrom_construction_(analysis)&diff=8717&oldid=prev 2020-12-09T11:14:37Z

<p>Protected &quot;<a href="/index.php/Cistrom_construction_(analysis)" title="Cistrom construction (analysis)">Cistrom construction (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 11:14, 9 December 2020</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Cistrom_construction_(analysis)&diff=8716&oldid=prev 2020-12-09T11:14:37Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Default-analysis-icon.png]] Cistrom construction<br /> ;Provider<br /> :[[Institute of Systems Biology]]<br /> ;Class<br /> :{{Class|biouml.plugins.bindingregions.analysis.CistromConstruction}}<br /> ;Plugin<br /> :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]<br /> <br /> ==== Description ====<br /> Cistrom construction<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Option''' – Please, select option (i.e. select the concrete session of given analysis).<br /> * '''Species''' – Please, select a taxonomical species<br /> * '''Path to folder with folders''' – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)<br /> * '''Folders names''' – Please, select folders names<br /> * '''Type of combined peaks''' – Please, select type of combined peaks<br /> * '''Minimal length of peaks''' – All peaks that are shorter than this threshold will be prolongated<br /> * '''Maximal length of peaks''' – All peaks that are longer than this threshold will be truncated<br /> * '''Do perform quality control?''' – Do perform quality control?<br /> * '''FPCM threshold''' – FPCM threshold<br /> * '''Site number threshold''' – If size of a data set is less than this threshold, then data set will be excluded from rank aggregation<br /> * '''Rank aggregation method''' – Please, select rank aggregation method<br /> * '''Parameters for OPTION_01''' – Parameters for OPTION_01<br /> ** '''Path to folder with cell lines''' – Path to folder with GTRD cell lines<br /> ** '''Cell line''' – Please, select cell line.<br /> ** '''Do remove cell treatments?''' – Do remove tracks when cell lines were treated?<br /> * '''Path to output folder''' – Path to output folder<br /> <br /> [[Category:Analyses]]<br /> [[Category:Binding regions (analyses group)]]<br /> [[Category:ISB analyses]]<br /> [[Category:Autogenerated pages]]</div>

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