https://wiki.biouml.org/index.php?action=history&feed=atom&title=Cis-module_identification_%28analysis%29 2026-04-13T12:42:16Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Cis-module_identification_(analysis)&diff=6395&oldid=prev 2015-08-25T05:19:52Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:19, 25 August 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal number of overlaps''' – Minimal number of overlaps</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Minimal number of overlaps''' – Minimal number of overlaps</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* '''Path to output folder''' – Output folder will be created under this location</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* '''Path to output folder''' – Output folder will be created under this location <ins class="diffchange diffchange-inline">when it doesn&lt;nowiki&gt;'&lt;/nowiki&gt;t exist</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Cis-module_identification_(analysis)&diff=4550&oldid=prev 2013-06-17T06:38:36Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 06:38, 17 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Class</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Class</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:{{Class|<del class="diffchange diffchange-inline">ru</del>.<del class="diffchange diffchange-inline">biosoft</del>.<del class="diffchange diffchange-inline">bsa</del>.analysis<del class="diffchange diffchange-inline">.bindingRegions</del>.CisModuleIdentification}}</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:{{Class|<ins class="diffchange diffchange-inline">biouml</ins>.<ins class="diffchange diffchange-inline">plugins</ins>.<ins class="diffchange diffchange-inline">bindingregions</ins>.analysis.CisModuleIdentification}}</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[<del class="diffchange diffchange-inline">Ru</del>.<del class="diffchange diffchange-inline">biosoft</del>.<del class="diffchange diffchange-inline">bsa </del>(plugin)|<del class="diffchange diffchange-inline">ru</del>.<del class="diffchange diffchange-inline">biosoft</del>.<del class="diffchange diffchange-inline">bsa </del>(<del class="diffchange diffchange-inline">Bio</del>-<del class="diffchange diffchange-inline">sequences </del>analyses <del class="diffchange diffchange-inline">plugin</del>)]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[<ins class="diffchange diffchange-inline">Biouml</ins>.<ins class="diffchange diffchange-inline">plugins</ins>.<ins class="diffchange diffchange-inline">bindingregions </ins>(plugin)|<ins class="diffchange diffchange-inline">biouml</ins>.<ins class="diffchange diffchange-inline">plugins</ins>.<ins class="diffchange diffchange-inline">bindingregions </ins>(<ins class="diffchange diffchange-inline">Binding</ins>-<ins class="diffchange diffchange-inline">regions related </ins>analyses)]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Cis-module_identification_(analysis)&diff=4486&oldid=prev 2013-06-14T11:07:21Z

<p>Default analysis icon as separate file</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 11:07, 14 June 2013</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:<del class="diffchange diffchange-inline">Binding</del>-<del class="diffchange diffchange-inline">regions-Cis-module-identification</del>-icon.png]] Cis-module identification</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:<ins class="diffchange diffchange-inline">Default</ins>-<ins class="diffchange diffchange-inline">analysis</ins>-icon.png]] Cis-module identification</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Cis-module_identification_(analysis)&diff=4280&oldid=prev 2013-06-07T10:39:50Z

<p>Protected &quot;<a href="/index.php/Cis-module_identification_(analysis)" title="Cis-module identification (analysis)">Cis-module identification (analysis)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 10:39, 7 June 2013</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Cis-module_identification_(analysis)&diff=4277&oldid=prev 2013-06-07T10:39:49Z

<p>Automatic synchronization with BioUML</p> <p><b>New page</b></p><div>;Analysis title<br /> :[[File:Binding-regions-Cis-module-identification-icon.png]] Cis-module identification<br /> ;Provider<br /> :[[Institute of Systems Biology]]<br /> ;Class<br /> :{{Class|ru.biosoft.bsa.analysis.bindingRegions.CisModuleIdentification}}<br /> ;Plugin<br /> :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]<br /> <br /> ==== Description ====<br /> Cis-module identification (type-1 and type-2)<br /> <br /> ==== Parameters: ====<br /> <br /> * '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks<br /> * '''Minimal number of overlaps''' – Minimal number of overlaps<br /> * '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules<br /> * '''Path to output folder''' – Output folder will be created under this location<br /> <br /> [[Category:Analyses]]<br /> [[Category:Binding regions (analyses group)]]<br /> [[Category:ISB analyses]]<br /> [[Category:Autogenerated pages]]</div>

WikiBot